
On 12/02/14 16:52, zhao shilin wrote:
>
> But in my experiment, there are no "Response", How can I write the 
> new("pairedData") command if I just want to compare the difference 
> between Normal and Tumor?
In this case, all the pairs would be replicates; the replicate structure 
would be c(1,1,1,1,...) , the groups structure would be 
list(c(1,1,1,1,...)) - and then use the 'nullProps = 0.5' in the 
getLikelihoods.BB function.

Best wishes,

Tom


-- 
Dr. Thomas J. Hardcastle

Department of Plant Sciences
University of Cambridge
Downing Street
Cambridge, CB2 3EA
United Kingdom


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