yes. Also below is a thread of recent responses from Dan and Steve
​regarding solutions to using release and devel version of R.  Caveat: this
can potentially take a significant amount of time to get it right if you
want to run both release and devel versions of R, depending on the
particulars of your current setup.

https://stat.ethz.ch/pipermail/bioconductor/2014-January/057154.html


On Mon, Feb 3, 2014 at 8:14 AM, Julian Gehring <julian.gehring@embl.de>wrote:

> Hi Kyle,
>
> DESeq2 1.3.35 is part of the current developer branch of bioc (2.14) [
> http://bioconductor.org/packages/devel/bioc/html/DESeq2.html], while the
> DESeq2 1.2.9 is part of the stable release (bioc 2.13).  If you want to use
> DESeq2 1.3.35, you should consider upgrading your bioc installation to the
> developer branch: http://www.bioconductor.org/developers/how-to/useDevel/
>
> Best wishes
> Julian
>
>
>
> On 02/03/2014 07:59 AM, Kyle Lambert [guest] wrote:
>
>>
>> I have been investigating how to update DESeq2 to version 1.3.35. When I
>> entered:
>>
>>> source("http://bioconductor.org/biocLite.R")
>>> biocLite("DESeq2")
>>>
>> My DESeq2 updated to 1.2.9.
>> I read that in order to get 1.3.35 bioconductor has to be updated from
>> 2.13 to 2.14. However, it seems the current release of bioconductor is
>> 2.13, and 2.14 is still being developed. Is Bioconductor version 2.14
>> unavailable for use right now? And is my information correct or is there a
>> way to update DESeq2 to version 1.3.35?
>>
>>   -- output of sessionInfo():
>>
>>  sessionInfo()
>>>
>> R version 3.0.2 (2013-09-25)
>> Platform: x86_64-w64-mingw32/x64 (64-bit)
>>
>> locale:
>> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
>> States.1252
>> [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
>> [5] LC_TIME=English_United States.1252
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> loaded via a namespace (and not attached):
>> [1] tools_3.0.2
>>
>> --
>> Sent via the guest posting facility at bioconductor.org.
>>
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>> science.biology.informatics.conductor
>>
>>
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