Hi there,

I am trying to use *exomeCopy* to discover any CNVs in a particular gene
(although analyzing the entire exome is idea).

I am stepping through the R steps found in:
http://bioconductor.org/packages/devel/bioc/vignettes/exomeCopy/inst/doc/exomeCopy.pdf

but I get lost when I reach the line:
counts[["GC.sq"]] <- example.counts$GC^2

I have no idea where example comes from? And it's referenced in later steps
as well.

Can someone help me figure out what or where the example object should come
from?

Thanks!
Brett

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