Hello,

I'm using SPIA version 2.14.0 and having a problem creating a SPIA RData
file.
I've downloaded a series of kgml files for aedes aegypti using the Download
KGML link on pathway pages, examples:
http://www.kegg.jp/kegg-bin/show_pathway?org_name=aag&mapno=00010&mapscale=&show_description=show
http://www.kegg.jp/kegg-bin/show_pathway?org_name=aag&mapno=00020&mapscale=&show_description=show

Then I ran this command:
makeSPIAdata(kgml.path="C:\\Users\\David\\Desktop\\aag_kegg\\",organism="aag",out.path="C:\\Users\\David\\Documents\\R\\win-library\\3.0\\SPIA\\extdata\\")

and got [1] FALSE as the result, and no aagSPIA.RData file was generated.

Then I tried this command on the example kgml files that downloaded with
SPIA:
makeSPIAdata(kgml.path="C:\\Users\\David\\Documents\\R\\win-library\\3.0\\SPIA\\extdata\\keggxml\\hsa",organism="aag",out.path="C:\\Users\\David\\Documents\\R\\win-library\\SPIA\\extdata\\")

This resulted in [1] TRUE and an aagSPIA.RData file being generated.

The aag kgml files I downloaded seem to be intact and complete.  They are
about 2 years newer than the example hsa files and it is possible something
changed in the xml was a thought I had.

Any advice would be greatly appreciated.

Thanks,
Dave

	[[alternative HTML version deleted]]

