Hi Audra,

Your row names of your tables are very long,which disrupt the formatting of
your table. When you generate count table at that time, keep your row names
(gene names) small and then try. I hope this will works.

Regards


On Sat, Dec 28, 2013 at 5:33 AM, Audra [guest] <guest@bioconductor.org>wrote:

>
> Hi,
>
> So I have been using edgeR for a while now to look at some differential
> expression data of snakes at different time points.  I can successfully use
> exactTest and topTags to get results, but instead of putting them in a nice
> table like the user guide shows it shows them all weird and makes it very
> difficult to read or even export.  Here is what the output of topTags looks
> like.
>
> > et <- exactTest(d, pair=c("1h","0h"))
> > n <- topTags(et, n=20)
> > n
> Comparison of groups:  0h-1h
>
>
>                                                                       logFC
> augustus_masked-Contig169-processed-gene-3.0-mRNA-1 transcript
> Name:"Similar to Hemoglobin subunit alpha-A (Drymarchon corais erebennus)"
> offset:645 AED:0.11 eAED:0.11 QI:645|1|1|1|1|1|3|423|
>   -2.857196
> maker-Contig3276-snap-gene-0.35-mRNA-1 transcript Name:"Similar to Muc2
> Mucin-2 (Fragment) (Rattus norvegicus)" offset:0 AED:0.14 eAED:0.14
> QI:0|0|0|1|0.4|0.5|26|0|
>   3.418006
> maker-Contig6179-snap-gene-0.61-mRNA-1 transcript Name:"Similar to SARM1
> Sterile alpha and TIR motif-containing protein 1 (Homo sapiens)" offset:0
> AED:0.05 eAED:0.05 QI:0|0|0|1|0.37|0.44|9|0|
>  3.176324
> maker-Contig3310-augustus-gene-0.46-mRNA-1 transcript Name:"Similar to
> HSPA8 Heat shock cognate 71 kDa protein (Equus caballus)" offset:0 AED:0.19
> eAED:0.19 QI:0|0.45|0.41|1|1|1|12|0|
> -2.188642
> maker-Contig2409-snap-gene-0.119-mRNA-1 transcript Name:"Similar to
> SLC27A4 Long-chain fatty acid transport protein 4 (Homo sapiens)" offset:0
> AED:0.19 eAED:0.19 QI:0|0.83|0.84|0.92|0.58|0.53|13|515|
>  2.288095
> maker-Contig128-snap-gene-5.59-mRNA-1 transcript Name:"Similar to LRP4
> Low-density lipoprotein receptor-related protein 4 (Homo sapiens)" offset:0
> AED:0.21 eAED:0.22 QI:0|0.73|0.70|0.90|0.83|0.83|31|0|
>  2.819809
> maker-Contig3982-snap-gene-0.32-mRNA-1 transcript Name:"Similar to CECR2
> Cat eye syndrome critical region protein 2 (Homo sapiens)" offset:34
> AED:0.05 eAED:0.05 QI:34|0.72|0.52|0.89|0.88|0.78|19|1120|
> 2.603195
> maker-Contig6152-augustus-gene-0.24-mRNA-1 transcript Name:"Similar to
> Traf2 TNF receptor-associated factor 2 (Mus musculus)" offset:0 AED:0.09
> eAED:0.09 QI:0|1|1|1|0.75|1|5|942|
>  -2.367034
> maker-Contig1788-snap-gene-1.48-mRNA-1 transcript Name:"Similar to SGK2
> Serine/threonine-protein kinase Sgk2 (Homo sapiens)" offset:0 AED:0.15
> eAED:0.15 QI:0|0.41|0.46|0.61|0.83|0.92|13|1973|
> -2.613372
> maker-Contig10160-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
> Name:"Similar to asah2 Neutral ceramidase (Danio rerio)" offset:0 AED:1.00
> eAED:1.00 QI:0|0|0|0|1|1|3|0|
> 1.850303
> maker-Contig2092-augustus-gene-1.46-mRNA-1 transcript Name:"Similar to
> Nrk1 Nicotinamide riboside kinase 1 (Rattus norvegicus)" offset:0 AED:0.20
> eAED:0.20 QI:0|0.6|0.66|1|0.6|0.5|6|847|
>  -1.968943
> maker-Contig987-augustus-gene-2.79-mRNA-1 transcript Name:"Similar to
> C9orf46 Transmembrane protein C9orf46 (Homo sapiens)" offset:338 AED:0.03
> eAED:0.03 QI:338|1|1|1|0.5|0.8|5|339|
> -1.790692
> maker-Contig3206-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
> Name:"Similar to ADAM12 Disintegrin and metalloproteinase domain-containing
> protein 12 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|4|0|
>  2.659047
> augustus_masked-Contig3021-processed-gene-0.2-mRNA-1 transcript
> Name:"Similar to CLDN15 Claudin-15 (Bos taurus)" offset:0 AED:0.22
> eAED:0.22 QI:0|0|0|0.83|1|1|6|0|
>            1.871232
> maker-Contig418-snap-gene-2.48-mRNA-1 transcript Name:"Similar to RBM43
> RNA-binding protein 43 (Homo sapiens)" offset:699 AED:0.05 eAED:0.05
> QI:699|0.4|0.33|0.66|0.6|0.66|6|0|
>  2.031038
> augustus_masked-Contig3728-processed-gene-0.0-mRNA-1 transcript
> Name:"Similar to AP2S1 AP-2 complex subunit sigma (Bos taurus)" offset:0
> AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|
>    -3.499827
> maker-Contig1593-snap-gene-0.14-mRNA-1 transcript Name:"Similar to HBEGF
> Proheparin-binding EGF-like growth factor (Gallus gallus)" offset:302
> AED:0.03 eAED:0.03 QI:302|1|1|1|0.6|0.5|6|1693|
>  -2.205585
> maker-Contig5017-augustus-gene-0.43-mRNA-1 transcript Name:"Similar to
> NR4A1 Nuclear receptor subfamily 4 group A member 1 (Canis familiaris)"
> offset:133 AED:0.16 eAED:0.16 QI:133|0.83|0.85|1|0.83|0.71|7|598|
>  -1.809087
> maker-Contig785-augustus-gene-2.125-mRNA-1 transcript Name:"Similar to
> DYSF Dysferlin (Homo sapiens)" offset:0 AED:0.05 eAED:0.05
> QI:0|0.93|0.93|0.93|0.86|0.87|16|399|
>           -4.666795
> maker-Contig2173-snap-gene-0.54-mRNA-1 transcript Name:"Similar to ABR
> Active breakpoint cluster region-related protein (Homo sapiens)" offset:0
> AED:0.11 eAED:0.11 QI:0|0|0|1|0.5|0.33|3|0|
>  -2.273639
>
>
>                                                                     logCPM
> augustus_masked-Contig169-processed-gene-3.0-mRNA-1 transcript
> Name:"Similar to Hemoglobin subunit alpha-A (Drymarchon corais erebennus)"
> offset:645 AED:0.11 eAED:0.11 QI:645|1|1|1|1|1|3|423|
>   6.191152
> maker-Contig3276-snap-gene-0.35-mRNA-1 transcript Name:"Similar to Muc2
> Mucin-2 (Fragment) (Rattus norvegicus)" offset:0 AED:0.14 eAED:0.14
> QI:0|0|0|1|0.4|0.5|26|0|
>  3.263290
> maker-Contig6179-snap-gene-0.61-mRNA-1 transcript Name:"Similar to SARM1
> Sterile alpha and TIR motif-containing protein 1 (Homo sapiens)" offset:0
> AED:0.05 eAED:0.05 QI:0|0|0|1|0.37|0.44|9|0|
> 3.391370
> maker-Contig3310-augustus-gene-0.46-mRNA-1 transcript Name:"Similar to
> HSPA8 Heat shock cognate 71 kDa protein (Equus caballus)" offset:0 AED:0.19
> eAED:0.19 QI:0|0.45|0.41|1|1|1|12|0|
> 9.610127
> maker-Contig2409-snap-gene-0.119-mRNA-1 transcript Name:"Similar to
> SLC27A4 Long-chain fatty acid transport protein 4 (Homo sapiens)" offset:0
> AED:0.19 eAED:0.19 QI:0|0.83|0.84|0.92|0.58|0.53|13|515|
> 4.019203
> maker-Contig128-snap-gene-5.59-mRNA-1 transcript Name:"Similar to LRP4
> Low-density lipoprotein receptor-related protein 4 (Homo sapiens)" offset:0
> AED:0.21 eAED:0.22 QI:0|0.73|0.70|0.90|0.83|0.83|31|0|
> 3.368075
> maker-Contig3982-snap-gene-0.32-mRNA-1 transcript Name:"Similar to CECR2
> Cat eye syndrome critical region protein 2 (Homo sapiens)" offset:34
> AED:0.05 eAED:0.05 QI:34|0.72|0.52|0.89|0.88|0.78|19|1120|
>  2.521161
> maker-Contig6152-augustus-gene-0.24-mRNA-1 transcript Name:"Similar to
> Traf2 TNF receptor-associated factor 2 (Mus musculus)" offset:0 AED:0.09
> eAED:0.09 QI:0|1|1|1|0.75|1|5|942|
>  5.425554
> maker-Contig1788-snap-gene-1.48-mRNA-1 transcript Name:"Similar to SGK2
> Serine/threonine-protein kinase Sgk2 (Homo sapiens)" offset:0 AED:0.15
> eAED:0.15 QI:0|0.41|0.46|0.61|0.83|0.92|13|1973|
> 3.540149
> maker-Contig10160-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
> Name:"Similar to asah2 Neutral ceramidase (Danio rerio)" offset:0 AED:1.00
> eAED:1.00 QI:0|0|0|0|1|1|3|0|
>  3.603789
> maker-Contig2092-augustus-gene-1.46-mRNA-1 transcript Name:"Similar to
> Nrk1 Nicotinamide riboside kinase 1 (Rattus norvegicus)" offset:0 AED:0.20
> eAED:0.20 QI:0|0.6|0.66|1|0.6|0.5|6|847|
>  4.225327
> maker-Contig987-augustus-gene-2.79-mRNA-1 transcript Name:"Similar to
> C9orf46 Transmembrane protein C9orf46 (Homo sapiens)" offset:338 AED:0.03
> eAED:0.03 QI:338|1|1|1|0.5|0.8|5|339|
> 5.989592
> maker-Contig3206-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
> Name:"Similar to ADAM12 Disintegrin and metalloproteinase domain-containing
> protein 12 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|4|0|
> 3.212799
> augustus_masked-Contig3021-processed-gene-0.2-mRNA-1 transcript
> Name:"Similar to CLDN15 Claudin-15 (Bos taurus)" offset:0 AED:0.22
> eAED:0.22 QI:0|0|0|0.83|1|1|6|0|
>           3.064311
> maker-Contig418-snap-gene-2.48-mRNA-1 transcript Name:"Similar to RBM43
> RNA-binding protein 43 (Homo sapiens)" offset:699 AED:0.05 eAED:0.05
> QI:699|0.4|0.33|0.66|0.6|0.66|6|0|
> 3.314820
> augustus_masked-Contig3728-processed-gene-0.0-mRNA-1 transcript
> Name:"Similar to AP2S1 AP-2 complex subunit sigma (Bos taurus)" offset:0
> AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|
>    3.597093
> maker-Contig1593-snap-gene-0.14-mRNA-1 transcript Name:"Similar to HBEGF
> Proheparin-binding EGF-like growth factor (Gallus gallus)" offset:302
> AED:0.03 eAED:0.03 QI:302|1|1|1|0.6|0.5|6|1693|
>  5.743097
> maker-Contig5017-augustus-gene-0.43-mRNA-1 transcript Name:"Similar to
> NR4A1 Nuclear receptor subfamily 4 group A member 1 (Canis familiaris)"
> offset:133 AED:0.16 eAED:0.16 QI:133|0.83|0.85|1|0.83|0.71|7|598|
>  6.470491
> maker-Contig785-augustus-gene-2.125-mRNA-1 transcript Name:"Similar to
> DYSF Dysferlin (Homo sapiens)" offset:0 AED:0.05 eAED:0.05
> QI:0|0.93|0.93|0.93|0.86|0.87|16|399|
>           2.599136
> maker-Contig2173-snap-gene-0.54-mRNA-1 transcript Name:"Similar to ABR
> Active breakpoint cluster region-related protein (Homo sapiens)" offset:0
> AED:0.11 eAED:0.11 QI:0|0|0|1|0.5|0.33|3|0|
>  3.335853
>
>
>
> PValue
> augustus_masked-Contig169-processed-gene-3.0-mRNA-1 transcript
> Name:"Similar to Hemoglobin subunit alpha-A (Drymarchon corais erebennus)"
> offset:645 AED:0.11 eAED:0.11 QI:645|1|1|1|1|1|3|423|
>   3.298254e-05
> maker-Contig3276-snap-gene-0.35-mRNA-1 transcript Name:"Similar to Muc2
> Mucin-2 (Fragment) (Rattus norvegicus)" offset:0 AED:0.14 eAED:0.14
> QI:0|0|0|1|0.4|0.5|26|0|
>  3.877782e-05
> maker-Contig6179-snap-gene-0.61-mRNA-1 transcript Name:"Similar to SARM1
> Sterile alpha and TIR motif-containing protein 1 (Homo sapiens)" offset:0
> AED:0.05 eAED:0.05 QI:0|0|0|1|0.37|0.44|9|0|
> 5.106264e-05
> maker-Contig3310-augustus-gene-0.46-mRNA-1 transcript Name:"Similar to
> HSPA8 Heat shock cognate 71 kDa protein (Equus caballus)" offset:0 AED:0.19
> eAED:0.19 QI:0|0.45|0.41|1|1|1|12|0|
> 5.891387e-05
> maker-Contig2409-snap-gene-0.119-mRNA-1 transcript Name:"Similar to
> SLC27A4 Long-chain fatty acid transport protein 4 (Homo sapiens)" offset:0
> AED:0.19 eAED:0.19 QI:0|0.83|0.84|0.92|0.58|0.53|13|515|
> 1.388640e-04
> maker-Contig128-snap-gene-5.59-mRNA-1 transcript Name:"Similar to LRP4
> Low-density lipoprotein receptor-related protein 4 (Homo sapiens)" offset:0
> AED:0.21 eAED:0.22 QI:0|0.73|0.70|0.90|0.83|0.83|31|0|
> 2.155298e-04
> maker-Contig3982-snap-gene-0.32-mRNA-1 transcript Name:"Similar to CECR2
> Cat eye syndrome critical region protein 2 (Homo sapiens)" offset:34
> AED:0.05 eAED:0.05 QI:34|0.72|0.52|0.89|0.88|0.78|19|1120|
>  5.390950e-04
> maker-Contig6152-augustus-gene-0.24-mRNA-1 transcript Name:"Similar to
> Traf2 TNF receptor-associated factor 2 (Mus musculus)" offset:0 AED:0.09
> eAED:0.09 QI:0|1|1|1|0.75|1|5|942|
>  1.062257e-03
> maker-Contig1788-snap-gene-1.48-mRNA-1 transcript Name:"Similar to SGK2
> Serine/threonine-protein kinase Sgk2 (Homo sapiens)" offset:0 AED:0.15
> eAED:0.15 QI:0|0.41|0.46|0.61|0.83|0.92|13|1973|
> 1.417311e-03
> maker-Contig10160-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
> Name:"Similar to asah2 Neutral ceramidase (Danio rerio)" offset:0 AED:1.00
> eAED:1.00 QI:0|0|0|0|1|1|3|0|
>  3.340976e-03
> maker-Contig2092-augustus-gene-1.46-mRNA-1 transcript Name:"Similar to
> Nrk1 Nicotinamide riboside kinase 1 (Rattus norvegicus)" offset:0 AED:0.20
> eAED:0.20 QI:0|0.6|0.66|1|0.6|0.5|6|847|
>  3.350736e-03
> maker-Contig987-augustus-gene-2.79-mRNA-1 transcript Name:"Similar to
> C9orf46 Transmembrane protein C9orf46 (Homo sapiens)" offset:338 AED:0.03
> eAED:0.03 QI:338|1|1|1|0.5|0.8|5|339|
> 3.837191e-03
> maker-Contig3206-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
> Name:"Similar to ADAM12 Disintegrin and metalloproteinase domain-containing
> protein 12 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|4|0|
> 3.898098e-03
> augustus_masked-Contig3021-processed-gene-0.2-mRNA-1 transcript
> Name:"Similar to CLDN15 Claudin-15 (Bos taurus)" offset:0 AED:0.22
> eAED:0.22 QI:0|0|0|0.83|1|1|6|0|
>           3.944978e-03
> maker-Contig418-snap-gene-2.48-mRNA-1 transcript Name:"Similar to RBM43
> RNA-binding protein 43 (Homo sapiens)" offset:699 AED:0.05 eAED:0.05
> QI:699|0.4|0.33|0.66|0.6|0.66|6|0|
> 4.279215e-03
> augustus_masked-Contig3728-processed-gene-0.0-mRNA-1 transcript
> Name:"Similar to AP2S1 AP-2 complex subunit sigma (Bos taurus)" offset:0
> AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|
>    4.889554e-03
> maker-Contig1593-snap-gene-0.14-mRNA-1 transcript Name:"Similar to HBEGF
> Proheparin-binding EGF-like growth factor (Gallus gallus)" offset:302
> AED:0.03 eAED:0.03 QI:302|1|1|1|0.6|0.5|6|1693|
>  5.249437e-03
> maker-Contig5017-augustus-gene-0.43-mRNA-1 transcript Name:"Similar to
> NR4A1 Nuclear receptor subfamily 4 group A member 1 (Canis familiaris)"
> offset:133 AED:0.16 eAED:0.16 QI:133|0.83|0.85|1|0.83|0.71|7|598|
>  5.262003e-03
> maker-Contig785-augustus-gene-2.125-mRNA-1 transcript Name:"Similar to
> DYSF Dysferlin (Homo sapiens)" offset:0 AED:0.05 eAED:0.05
> QI:0|0.93|0.93|0.93|0.86|0.87|16|399|
>           5.400893e-03
> maker-Contig2173-snap-gene-0.54-mRNA-1 transcript Name:"Similar to ABR
> Active breakpoint cluster region-related protein (Homo sapiens)" offset:0
> AED:0.11 eAED:0.11 QI:0|0|0|1|0.5|0.33|3|0|
>  5.521102e-03
>
>
>                                                                         FDR
> augustus_masked-Contig169-processed-gene-3.0-mRNA-1 transcript
> Name:"Similar to Hemoglobin subunit alpha-A (Drymarchon corais erebennus)"
> offset:645 AED:0.11 eAED:0.11 QI:645|1|1|1|1|1|3|423|
>   0.3738821
> maker-Contig3276-snap-gene-0.35-mRNA-1 transcript Name:"Similar to Muc2
> Mucin-2 (Fragment) (Rattus norvegicus)" offset:0 AED:0.14 eAED:0.14
> QI:0|0|0|1|0.4|0.5|26|0|
>  0.3738821
> maker-Contig6179-snap-gene-0.61-mRNA-1 transcript Name:"Similar to SARM1
> Sterile alpha and TIR motif-containing protein 1 (Homo sapiens)" offset:0
> AED:0.05 eAED:0.05 QI:0|0|0|1|0.37|0.44|9|0|
> 0.3738821
> maker-Contig3310-augustus-gene-0.46-mRNA-1 transcript Name:"Similar to
> HSPA8 Heat shock cognate 71 kDa protein (Equus caballus)" offset:0 AED:0.19
> eAED:0.19 QI:0|0.45|0.41|1|1|1|12|0|
> 0.3738821
> maker-Contig2409-snap-gene-0.119-mRNA-1 transcript Name:"Similar to
> SLC27A4 Long-chain fatty acid transport protein 4 (Homo sapiens)" offset:0
> AED:0.19 eAED:0.19 QI:0|0.83|0.84|0.92|0.58|0.53|13|515|
> 0.7050126
> maker-Contig128-snap-gene-5.59-mRNA-1 transcript Name:"Similar to LRP4
> Low-density lipoprotein receptor-related protein 4 (Homo sapiens)" offset:0
> AED:0.21 eAED:0.22 QI:0|0.73|0.70|0.90|0.83|0.83|31|0|
> 0.9118705
> maker-Contig3982-snap-gene-0.32-mRNA-1 transcript Name:"Similar to CECR2
> Cat eye syndrome critical region protein 2 (Homo sapiens)" offset:34
> AED:0.05 eAED:0.05 QI:34|0.72|0.52|0.89|0.88|0.78|19|1120|
>  1.0000000
> maker-Contig6152-augustus-gene-0.24-mRNA-1 transcript Name:"Similar to
> Traf2 TNF receptor-associated factor 2 (Mus musculus)" offset:0 AED:0.09
> eAED:0.09 QI:0|1|1|1|0.75|1|5|942|
>  1.0000000
> maker-Contig1788-snap-gene-1.48-mRNA-1 transcript Name:"Similar to SGK2
> Serine/threonine-protein kinase Sgk2 (Homo sapiens)" offset:0 AED:0.15
> eAED:0.15 QI:0|0.41|0.46|0.61|0.83|0.92|13|1973|
> 1.0000000
> maker-Contig10160-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
> Name:"Similar to asah2 Neutral ceramidase (Danio rerio)" offset:0 AED:1.00
> eAED:1.00 QI:0|0|0|0|1|1|3|0|
>  1.0000000
> maker-Contig2092-augustus-gene-1.46-mRNA-1 transcript Name:"Similar to
> Nrk1 Nicotinamide riboside kinase 1 (Rattus norvegicus)" offset:0 AED:0.20
> eAED:0.20 QI:0|0.6|0.66|1|0.6|0.5|6|847|
>  1.0000000
> maker-Contig987-augustus-gene-2.79-mRNA-1 transcript Name:"Similar to
> C9orf46 Transmembrane protein C9orf46 (Homo sapiens)" offset:338 AED:0.03
> eAED:0.03 QI:338|1|1|1|0.5|0.8|5|339|
> 1.0000000
> maker-Contig3206-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
> Name:"Similar to ADAM12 Disintegrin and metalloproteinase domain-containing
> protein 12 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|4|0|
> 1.0000000
> augustus_masked-Contig3021-processed-gene-0.2-mRNA-1 transcript
> Name:"Similar to CLDN15 Claudin-15 (Bos taurus)" offset:0 AED:0.22
> eAED:0.22 QI:0|0|0|0.83|1|1|6|0|
>           1.0000000
> maker-Contig418-snap-gene-2.48-mRNA-1 transcript Name:"Similar to RBM43
> RNA-binding protein 43 (Homo sapiens)" offset:699 AED:0.05 eAED:0.05
> QI:699|0.4|0.33|0.66|0.6|0.66|6|0|
> 1.0000000
> augustus_masked-Contig3728-processed-gene-0.0-mRNA-1 transcript
> Name:"Similar to AP2S1 AP-2 complex subunit sigma (Bos taurus)" offset:0
> AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|
>    1.0000000
> maker-Contig1593-snap-gene-0.14-mRNA-1 transcript Name:"Similar to HBEGF
> Proheparin-binding EGF-like growth factor (Gallus gallus)" offset:302
> AED:0.03 eAED:0.03 QI:302|1|1|1|0.6|0.5|6|1693|
>  1.0000000
> maker-Contig5017-augustus-gene-0.43-mRNA-1 transcript Name:"Similar to
> NR4A1 Nuclear receptor subfamily 4 group A member 1 (Canis familiaris)"
> offset:133 AED:0.16 eAED:0.16 QI:133|0.83|0.85|1|0.83|0.71|7|598|
>  1.0000000
> maker-Contig785-augustus-gene-2.125-mRNA-1 transcript Name:"Similar to
> DYSF Dysferlin (Homo sapiens)" offset:0 AED:0.05 eAED:0.05
> QI:0|0.93|0.93|0.93|0.86|0.87|16|399|
>           1.0000000
> maker-Contig2173-snap-gene-0.54-mRNA-1 transcript Name:"Similar to ABR
> Active breakpoint cluster region-related protein (Homo sapiens)" offset:0
> AED:0.11 eAED:0.11 QI:0|0|0|1|0.5|0.33|3|0|
>  1.0000000
>
> How do you get that nice table format everyone shows.  I am getting
> frustrated because i can generate data so easily, but I just cannot get it
> into a format to look at it easily.  Any input would be greatly appreciated.
>
> Audra
>
>  -- output of sessionInfo():
>
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] edgeR_3.4.2  limma_3.18.6
>
> loaded via a namespace (and not attached):
> [1] tools_3.0.2
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@r-project.org
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> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>



-- 
Reema Singh
Postdoctoral Research Assistant
College of Life Sciences
University of Dundee,
Dundee DD1 4HN, Scotland
United Kingdom

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