Hi all,

I was looking for good packages which does gene enrichment analysis. I came
across GAGE which provides good analysis. My question is can it take up
proteomics data too or is it designed for microarray data sets only. The
data which I would like to analyze  looks like this-

 Symbol Unaff (FC) Aff(FC)  XIST 639.271 890.0833  C7orf63 261.7478 93.08333
SERPINB6 156.641 136.84  LINC00273 130.3398 60.60667  LOC401497 103.14
175.8533  ARHGEF12 94.00556 96.20667  TSIX 83.19314 80.91333  POM121L8P
80.03056 52.72
The first column comprises symbols while the rest of the columns are fold
changes ( diseased/N) for diff sample sets ( Species=Human). The total
number of differential expressed genes are around 1200.

Please advice.

Thanks, Roopa

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