Hi all,

I am unable to install Rgraphviz as a dependency for gage package.
I am using R (3.0.2)  and bioconductor 2.13.

>
biocLite('Rgraphviz')

BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.13 (BiocInstaller 1.12.0), R version 3.0.2.
Installing package(s) 'Rgraphviz'
trying URL '
http://bioconductor.org/packages/2.13/bioc/src/contrib/Rgraphviz_2.6.0.tar.gz
'
Content type 'application/x-gzip' length 7451849 bytes (7.1 Mb)
opened URL
...
...
gcc -std=gnu99 -shared -L/usr/local/lib64 -o Rgraphviz.so LL_funcs.o
Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o
buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o
libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a
libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz
gcc: error: libxdot.a: No such file or directory
gcc: error: libgvplugin_dot_layout.a: No such file or directory
gcc: error: libgvplugin_neato_layout.a: No such file or directory
gcc: error: libgvplugin_core.a: No such file or directory
gcc: error: libgvc.a: No such file or directory
gcc: error: libpathplan.a: No such file or directory
gcc: error: libgraph.a: No such file or directory
gcc: error: libcdt.a: No such file or directory
make: *** [Rgraphviz.so] Error 1
ERROR: compilation failed for package ‘Rgraphviz’
* removing ‘/home/km/lib64/R/library/Rgraphviz’

The downloaded source packages are in
        ‘/tmp/RtmpOFdCuI/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘Rgraphviz’ had non-zero exit status



> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base


Regards,
Krishna

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