thank you very much



On Wed, Dec 4, 2013 at 1:55 AM, Dan Tenenbaum <dtenenba@fhcrc.org> wrote:

> PS. An easy way to select mirrors is to use the functions
> chooseCRANmirror()
> and
> chooseBioCmirror()
>
> Dan
>
>
> ----- Original Message -----
>  > From: "Dan Tenenbaum" <dtenenba@fhcrc.org>
> > To: "Wang Peter" <wng.peter@gmail.com>
> > Cc: bioconductor@r-project.org
> > Sent: Tuesday, December 3, 2013 8:32:26 AM
> > Subject: Re: [BioC] failed to install biocondoctuor
> >
> > You don't say which mirrors you are using. What is the output of:
> >
> > library(BiocInstaller)
> > biocinstallRepos()
> >
> > ?
> >
> > Try using the mirror that Tengfei Yin set up in China:
> >
> > http://mirrors.ustc.edu.cn/bioc/
> >
> > You should also pick a CRAN mirror in China, from this list:
> >
> > http://cran.r-project.org/mirrors.html
> >
>
>
>
> > Dan
> >
> >
> > ----- Original Message -----
> > > From: "Wang Peter" <wng.peter@gmail.com>
> > > To: bioconductor@r-project.org
> > > Sent: Tuesday, December 3, 2013 5:47:32 AM
> > > Subject: [BioC] failed to install biocondoctuor
> > >
> > > i just reinstall the biocondoctuor in china.
> > > it is very slow, due to chinese restriction to foreign website
> > >
> > > and i meet such error, i never met before
> > >
> > >
> > > package �annotate� successfully unpacked and MD5 sums checked
> > > Error in read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package",
> > > "Type"))
> > > :
> > >   cannot open the connection
> > > In addition: Warning messages:
> > > 1: packages �base�, �boot�, �class�, �compiler�, �datasets�,
> > > �foreign�,
> > > �graphics�, �grDevices�, �grid�, �MASS�, �methods�, �nlme�,
> > > �parallel�,
> > > �spatial�, �splines�, �stats�, �stats4�, �tcltk�, �tools�, �utils�
> > > are not
> > > available (for R version 2.15.2)
> > > 2: In download.file(url, destfile, method, mode = "wb", ...) :
> > >   downloaded length 262334 != reported length 4200978
> > > 3: In download.file(url, destfile, method, mode = "wb", ...) :
> > >   downloaded length 57623 != reported length 2346708
> > > 4: In download.file(url, destfile, method, mode = "wb", ...) :
> > >   downloaded length 436576 != reported length 889011
> > > 5: In download.file(url, destfile, method, mode = "wb", ...) :
> > >   downloaded length 1481998 != reported length 2048190
> > > 6: In download.file(url, destfile, method, mode = "wb", ...) :
> > >   downloaded length 589241 != reported length 724724
> > > 7: In download.file(url, destfile, method, mode = "wb", ...) :
> > >   downloaded length 123147 != reported length 3506196
> > > 8: In unzip(zipname, exdir = dest) : error 1 in extracting from zip
> > > file
> > > 9: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package",
> > > "Type")) :
> > >   cannot open compressed file 'AnnotationDbi/DESCRIPTION', probable
> > >   reason
> > > 'No such file or directory'
> > > > sessionInfo()
> > > R version 2.15.2 (2012-10-26)
> > > Platform: i386-w64-mingw32/i386 (32-bit)
> > > locale:
> > > [1] LC_COLLATE=Chinese_People's Republic of China.936
> > > [2] LC_CTYPE=Chinese_People's Republic of China.936
> > > [3] LC_MONETARY=Chinese_People's Republic of China.936
> > > [4] LC_NUMERIC=C
> > > [5] LC_TIME=Chinese_People's Republic of China.936
> > > attached base packages:
> > > [1] stats     graphics  grDevices utils     datasets  methods
> > >   base
> > > other attached packages:
> > > [1] BiocInstaller_1.8.3
> > > loaded via a namespace (and not attached):
> > > [1] tools_2.15.2
> > >
> > > --
> > > shan gao
> > > Room 231(Dr.Fei lab)
> > > Boyce Thompson Institute for Plant Research
> > > Cornell University
> > > Tower Road, Ithaca, NY 14853-1801
> > > Office phone: 1-607-254-1267(day)
> > > Official email:sg839@cornell.edu
> > > Facebook:http://www.facebook.com/profile.php?id=100001986532253
> > >
> > >     [[alternative HTML version deleted]]
> > >
> > >
> > > _______________________________________________
> > > Bioconductor mailing list
> > > Bioconductor@r-project.org
> > > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > > Search the archives:
> > > http://news.gmane.org/gmane.science.biology.informatics.conductor
> >
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor@r-project.org
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > Search the archives:
> > http://news.gmane.org/gmane.science.biology.informatics.conductor
>



-- 
shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute for Plant Research
Cornell University
Tower Road, Ithaca, NY 14853-1801
Office phone: 1-607-254-1267(day)
Official email:sg839@cornell.edu
Facebook:http://www.facebook.com/profile.php?id=100001986532253

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