hi Natalia,

Sorry about this. It is a simple bug for when number of samples = number of
coefficients to fit.

I am pushing out a fix now (v1.2.7) which will be available in ~1 day, and
I will add a unit test for such designs to devel.

Mike




On Wed, Dec 4, 2013 at 3:56 AM, Natalia [guest] <guest@bioconductor.org>wrote:

>
> Dear all,
> I’m trying to use DESeq2 but I get this error message when I try the code:
> res <- results(dds)
> Error in is.numeric(cooksCutoff) : 'cooksCutoff' is missing
>
> I can't find any answer about this error. Could you please help me?
> Thanks in advance!
>
> Cheers
>
> Natalia
>
>
>  -- output of sessionInfo():
>
> > sessionInfo()
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
> States.1252    LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C                           LC_TIME=English_United
> States.1252
>
> attached base packages:
> [1] parallel  stats     graphics  grDevices utils     datasets  methods
> base
>
> other attached packages:
>  [1] DESeq2_1.2.6            RcppArmadillo_0.3.920.3 Rcpp_0.10.6
>   easyRNASeq_1.8.3        ShortRead_1.20.0        Rsamtools_1.14.2
>  [7] GenomicRanges_1.14.3    DESeq_1.14.0            lattice_0.20-24
>   locfit_1.5-9.1          Biostrings_2.30.1       XVector_0.2.0
> [13] IRanges_1.20.6          edgeR_3.4.1             limma_3.18.3
>    biomaRt_2.18.0          Biobase_2.22.0          genomeIntervals_1.18.0
> [19] BiocGenerics_0.8.0      intervals_0.14.0
>
> loaded via a namespace (and not attached):
>  [1] annotate_1.40.0      AnnotationDbi_1.24.0 bitops_1.0-6
> DBI_0.2-7            genefilter_1.44.0    geneplotter_1.40.0   grid_3.0.2
>  [8] hwriter_1.3          latticeExtra_0.6-26  LSD_2.5
>  RColorBrewer_1.0-5   RCurl_1.95-4.1       RSQLite_0.11.4
> splines_3.0.2
> [15] stats4_3.0.2         survival_2.37-4      XML_3.98-1.1
> xtable_1.7-1         zlibbioc_1.8.0
>
>
> --
> Sent via the guest posting facility at bioconductor.org.
>

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