Hi,

 

I am analyzing Affymetrix hugene2.0st arrays using the oligo package and had
hoped to be able to use informative/non-informative probe calling (FARMS,
Tolloen et 2007) as a means on filtering data. I had used this on older 3'
biased arrays analyzed with affy but the farms package only works with an
affyBatch object. Is this possible with another package or should I be
considering a different approach to filter array data on the newer Affy
arrays?

 

Cheers,

Fraser


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