Hi,

There is no tutorial (yet) available but it will come early next year. In the meantime, you can take a look at the analysis pipeline and the code published with the following publication:

Haibe-Kains, B., Desmedt, C., Loi, S. M., Culhane, A. C., Bontempi, G., Quackenbush, J. F., & Sotiriou, C. (2012). A three-gene model to robustly identify breast cancer molecular subtypes. Journal of the National Cancer Institute, 104(4), 311–325. doi:10.1093/jnci/djr545

Hope this helps.

Best regards,
---
Benjamin Haibe-Kains

On Nov 8, 2013, at 14:38 , Levi Waldron <levi.waldron@hunter.cuny.edu> wrote:

> FYI in case you're not watching the BioC listserv...
> 
> 
> ---------- Forwarded message ----------
> From: Peterson, Leif <LEPeterson@houstonmethodist.org>
> Date: Fri, Nov 8, 2013 at 1:23 PM
> Subject: [BioC] PAM-50 genefu example with Hu-133A GEO datasets
> To: "bioconductor@r-project.org" <bioconductor@r-project.org>
> 
> 
> 
> Are there any online tutorials (documents) for implementing genefu to
> perform subtype class prediction using several e.g. Hu-133A GEO breast
> ca datasets?
> 
> Thx, LP
> 
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