Dear mail list members, 


I'm working with Agilent single color arrays (4 x 44K) wich data were extracted by Feature Extraction software; this software provides some flags measurements in the file. 


In limma manual the authors showed an example with Agilent single color arrays: Time Course E ects of Corn Oil on Rat Thymus with Agilent 4x44K Arrays - but in this they filtered out control probes and low expressed probes. 


I couldn't find in the manual if limma takes the flag measurement parameters to process data. If not, does anyone have an example of a function do to that? 



Best regards, 


Amanda Freire de Assis, MSc 
Molecular Immunogenetics Group 
University of São Paulo 
Av. Bandeirantes, 3900 
14049-900 - Ribeirão Preto - Brazil 
+55 16 36023246 


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