sorry, i tried many versions,i can only list one of them:

> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-redhat-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=C                 LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base



On Wed, Oct 30, 2013 at 9:15 AM, Martin Morgan <mtmorgan@fhcrc.org> wrote:

> On 10/29/2013 08:01 PM, Wang Peter wrote:
>
>> i try to output the quality files, but the perCycleQuality picture is
>> vague
>>
>>
>> please see the attachment
>>
>
> Please see the posting guide
>
>   http://bioconductor.org/help/**mailing-list/posting-guide/<http://bioconductor.org/help/mailing-list/posting-guide/>
>
> for valid attachments:
>
>   "The following attachment types are accepted: png, pdf, rda/Rdata
>
> and other necessary information, in particular the output of
>
>   sessionInfo()
>
>
>
>
>>
>> i tried different R versions
>>
>>
>>
>> library(ShortRead);
>>
>> fastqfile="T2-1.fastq";
>>
>> qa <- qa(dirPath=".", pattern=fastqfile, type="fastq");
>>
>> report(qa, dest="qcReport", type="html");
>>
>>
>>
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-- 
shan gao
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