[1] "Writing BSgenome to disk on ccwsge0094 : /scratch/4800353.1.huge/RtmpKAuueD/file37f0353ccf57.fa" [1] "Executing Splicemap on ccwsge0094 using 4 cores. Parameters:" [1] "-max_intron 400000 -min_intron 20000 -max_multi_hit 10 -selectSingleHit TRUE -seed_mismatch 1 -read_mismatch 2 -try_hard yes -genome_dir /scratch/4800353.1.huge/RtmpKAuueD/file37f0353ccf57.fa -reads_list1 /scratch/4800353.1.huge/133het.fastq -read_format FASTQ -quality_format phred-33 -temp_path /scratch/4800353.1.huge/RtmpKAuueD -num_chromosome_together 4 -num_threads 4 -bowtie_base_dir /sps/inter/isc/uborello/software/lib64/R/library/BSgenome.Mmusculus.UCSC.mm10.Rbowtie/alignmentIndex/bowtieIndex -outfile /scratch/4800353.1.huge/RtmpKAuueD/133het.fastq37f048d00b0c.sam"