Hi there,

I am using the R package TxDb.Hsapiens.UCSC.hg19.knownGene to annotate SNPs
using the locateVariants() function from the VariantAnnotation package.

For reasons of compatibility with other pipelines I developed, I would like
to use Ensembl/Gencode annotation. Is there a package for this? Otherwise
please advice on how best to generate this myself.

Thank you.

Regards, Adai

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