Herve,

I encountered the following error with disjointExons. Could you please help? Thanks!

Best regards,

Julie

library("GenomicRanges")
library("Rsamtools")
library("GenomicFeatures")
mse <- makeTranscriptDbFromBiomart( biomart="ensembl",   dataset="mmusculus_gene_ensembl" )
Download and preprocess the 'transcripts' data frame ... OK
Download and preprocess the 'chrominfo' data frame ... OK
Download and preprocess the 'splicings' data frame ... OK
Download and preprocess the 'genes' data frame ... OK
Prepare the 'metadata' data frame ... OK
Make the TranscriptDb object ... OK

  exonicParts <- disjointExons( mse, aggregateGenes=TRUE )
Error: evaluation nested too deeply: infinite recursion / options(expressions=)?

sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
 [1] DEXSeq_1.6.0           biomaRt_2.18.0         GenomicFeatures_1.14.0 AnnotationDbi_1.24.0   Biobase_2.20.1
 [6] Rsamtools_1.12.4       Biostrings_2.28.0      GenomicRanges_1.14.1   XVector_0.2.0          IRanges_1.20.0
[11] BiocGenerics_0.8.0

loaded via a namespace (and not attached):
 [1] bitops_1.0-6       BSgenome_1.28.0    DBI_0.2-7          hwriter_1.3        RCurl_1.95-4.1     RSQLite_0.11.4
 [7] rtracklayer_1.20.4 statmod_1.4.18     stats4_3.0.2       stringr_0.6.2      tools_3.0.2        XML_3.95-0.2
[13] zlibbioc_1.6.0

	[[alternative HTML version deleted]]

