Hi everyone,

I am using the function genas from the Limma package to calculate the logFC correlation between some contrasts.

genas(fit.contrast, coef = c(2,3), chooseMethod = "Fpval", plot = TRUE)

I have isolated the list of DE probes in common between the contrasts of interest and I would like to visualize these probes on the plots with a different colour. Is there a way to do this directly on the plot generated by genas? I am quite stuck on trying to enter the options of the plot argument and impose these parameters. Any help would be very appreciated. Thanks in advance.

Regards,
Christian


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