Hi everyone,

I am using the function genas from the Limma package to calculate the logFC correlation between some contrasts.

genas(fit.contrast, coef = c(2,3), chooseMethod = "Fpval", plot = TRUE)

I have isolated the list of DE probes in common between the contrasts of interest and I would like to visualize these probes on the plots with a different colour. Is there a way to do this directly on the plot generated by genas? I am quite stuck on trying to enter the options of the plot argument and impose these parameters. Any help would be very appreciated. Thanks in advance.

Regards,
Christian


-- 
The University of Stirling has been ranked in the top 12 of UK universities for graduate employment*.
94% of our 2012 graduates were in work and/or further study within six months of graduation.
*The Telegraph
The University of Stirling is a charity registered in Scotland, number SC 011159.


	[[alternative HTML version deleted]]