This is presumably my fault.  Will fix and commit.

--t

*He that would live in peace and at ease, *
*Must not speak all he knows, nor judge all he sees.*
*
*
Benjamin Franklin, Poor Richard's
Almanack<http://archive.org/details/poorrichardsalma00franrich>


On Fri, Oct 11, 2013 at 4:04 AM, Pan Du <dupan.mail@gmail.com> wrote:

> Hi Hitoshi
>
> Based on the information you provided. I believe the problem happens when
> you loading the methylumi package. So please check whether methylumi
> package was properly installed. If the problem still exists, please provide
> your sessionInfo().
>
>
> Pan
>
>
> On Fri, Oct 11, 2013 at 3:00 AM, <bioconductor-request@r-project.org>
> wrote:
>
> >
> >
> > Date: Thu, 10 Oct 2013 19:12:51 -0400
> > From: Hitoshi Okada <hokada0421@gmail.com>
> > To: bioconductor@r-project.org
> > Subject: [BioC] Lumi failed to load
> > Message-ID: <CC3D6769-98D2-4705-BD34-59ED0CCB3F1A@gmail.com>
> > Content-Type: text/plain; charset=windows-1252
> >
> > Hi,
> >
> > I have installed R version 3.0.2 (Mac version, MacOS is 10.8.5)and lumi
> > (2.12), and tried to load but failed with the  message at bottom.
> >
> > I appreciate any suggestions to solve this problem. I have updated
> > Bioconductor packages are updated.
> >
> > Thank you
> >
> > Hitoshi
> >
> >
> > > library(lumi)
> > Loading required package: Biobase
> > Loading required package: BiocGenerics
> > Loading required package: parallel
> >
> > Attaching package: ?BiocGenerics?
> >
> > The following objects are masked from ?package:parallel?:
> >
> >     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
> clusterExport,
> >     clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
> >     parSapply, parSapplyLB
> >
> > The following object is masked from ?package:stats?:
> >
> >     xtabs
> >
> > The following objects are masked from ?package:base?:
> >
> >     anyDuplicated, append, as.data.frame, as.vector, cbind, colnames,
> > duplicated,
> >     eval, Filter, Find, get, intersect, lapply, Map, mapply, match, mget,
> > order,
> >     paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind,
> Reduce,
> >     rep.int, rownames, sapply, setdiff, sort, table, tapply, union,
> > unique,
> >     unlist
> >
> > Welcome to Bioconductor
> >
> >     Vignettes contain introductory material; view with
> > 'browseVignettes()'. To
> >     cite Bioconductor, see 'citation("Biobase")', and for packages
> >     'citation("pkgname")'.
> >
> > Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()),
> versionCheck
> > = vI[[j]]) :
> >   there is no package called ?minfi?
> > In addition: Warning message:
> > replacing previous import by ?graphics::image? when loading ?methylumi?
> > Error: package or namespace load failed for ?lumi?
> >
> >
> >
> >
>
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>
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