Hello all,

The brief communication describing the metagenomeSeq package is out in
Nature Methods. metagenomeSeq is designed to determine features (be it
Operational Taxanomic Unit (OTU), species, etc.) that are differentially
abundant between two or more groups of multiple samples in targeted
metagenomic experiments. metagenomeSeq is designed to address the effects
of both normalization and under-sampling of microbial communities on
differential abundance detection.

The paper:
http://www.nature.com/nmeth/journal/vaop/ncurrent/abs/nmeth.2658.html

The package:
http://bioconductor.org/packages/release/bioc/html/metagenomeSeq.html

Cheers,
Hector

Hector Corrada Bravo
Center for Bioinformatics and Computational Biology
University of Maryland, College Park
hcorrada@umiacs.umd.edu

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