Hi guys,
 
I tried to install affxparser in R3.0.1 in Cygwin x64, but got some errors.
 
Makevars:4: recipe for target `fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o' failed
make: *** [fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o] Error 1
ERROR: compilation failed for package ‘affxparser’
* removing ‘/usr/lib/R/site-library/affxparser’
 
 Any suggestion?
 
Thanks a lot for the help!
 
Ying
 
The following are the full text:
 
> source("http://bioconductor.org/biocLite.R")
Bioconductor version 2.12 (BiocInstaller 1.10.3), ?biocLite for help
> biocLite("affxparser")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.12 (BiocInstaller 1.10.3), R version 3.0.1.
Installing package(s) 'affxparser'
trying URL 'http://bioconductor.org/packages/2.12/bioc/src/contrib/affxparser_1.32.3.tar.gz'
Content type 'application/x-gzip' length 803037 bytes (784 Kb)
opened URL
==================================================
downloaded 784 Kb
* installing *source* package ‘affxparser’ ...
** libs
rm -f fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/sr                                 c/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformatio                                 n.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_                                 files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCPro                                 beSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_                                 files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fu                                 sion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data                                 /src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_                                 sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/s                                 rc/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotype                                 Entry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_f                                 iles/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_s                                 dk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/Data                                 Set.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/d                                 ata/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/c                                 alvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/E                                 xceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAda                                 pter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o f                                 usion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusi                                 on/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNam                                 es.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/                                 fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResu                                 lts.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion                                 _sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_                                 files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/Fusion                                 CHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData                                 .o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_fi                                 les/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionC                                 HPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificatio                                 nDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o                                  fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/pars                                 ers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusi                                 on_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files                                 /parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuanti                                 ficationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetect                                 ionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusi                                 on_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parser                                 s/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o                                  fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/p                                 arsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderRead                                 er.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_f                                 iles/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fus                                 ion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/Str                                 ingUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFil                                 eData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_s                                 dk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fus                                 ion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvF                                 ile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o                                  fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fu                                 sion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/ut                                 il/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_pa                                 rser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_                                 pgf_parser.o R_affx_chp_parser.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk                                 /calvin_files/data/src/CDFData.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.                                 cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -                                 o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cp                                 p -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp                                  -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.                                 cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk                                 /calvin_files/data/src/CELData.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp -o                                  fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CHPData.cpp -o fusion_sdk                                 /calvin_files/data/src/CHPData.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp -o                                  fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp -o f                                 usion_sdk/calvin_files/data/src/CHPMultiDataData.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CHPTilingData.cpp -o fusi                                 on_sdk/calvin_files/data/src/CHPTilingData.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp                                  -o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CHPQuantificationDetectio                                 nData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp -o f                                 usion_sdk/calvin_files/data/src/CHPGenotypeEntry.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp -o                                  fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/ColumnInfo.cpp -o fusion_                                 sdk/calvin_files/data/src/ColumnInfo.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_s                                 dk/calvin_files/data/src/DataGroup.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fu                                 sion_sdk/calvin_files/data/src/DataGroupHeader.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk                                 /calvin_files/data/src/DataSet.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusi                                 on_sdk/calvin_files/data/src/DataSetHeader.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_                                 sdk/calvin_files/data/src/FileHeader.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion                                 _sdk/calvin_files/data/src/GenericData.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o                                  fusion_sdk/calvin_files/data/src/GenericDataHeader.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o                                  fusion_sdk/calvin_files/exception/src/ExceptionBase.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCEL                                 DataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDat                                 aAdapter.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHP                                 DataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDat                                 aAdapter.o
g++ -I/usr/lib/R/include -DNDEBUG -I.  -Ifusion_sdk/calvin_files/array/src -Ifus                                 ion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_s                                 dk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifu                                 sion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/paramet                                 er/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portabili                                 ty/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/sr                                 c -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvF                                 ile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_                                        -ggdb -O2 -pipe -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/build=/usr/src/d                                 ebug/R-3.0.1-1 -fdebug-prefix-map=/pub/devel/R/R-3.0.1-1/src/R-3.0.1=/usr/src/de                                 bug/R-3.0.1-1  -O0 -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o                                  fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.h:27:0,
                 from fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp:21:
fusion_sdk/file/BPMAPFileData.h:290:2: error: ‘FILE’ does not name a type
  FILE *m_fp;
  ^
Makevars:4: recipe for target `fusion_sdk/calvin_files/fusion/src/FusionBPMAPDat                                 a.o' failed
make: *** [fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o] Error 1
ERROR: compilation failed for package ‘affxparser’
* removing ‘/usr/lib/R/site-library/affxparser’
The downloaded source packages are in
        ‘/tmp/RtmpKuZDMY/downloaded_packages’
Warning message:
In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘affxparser’ had non-zero exit status
> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-unknown-cygwin (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base
other attached packages:
[1] BiocInstaller_1.10.3
loaded via a namespace (and not attached):
[1] tools_3.0.1
> traceback()
No traceback available
>
>

 		 	   		  
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