Hi N.O.,

If you have not already tried already, PMN (http://www.plantcyc.org/) would
be quite useful. You should find the required info in AraCyc. However, you
may have to create a login and play around a bit to get right details.

All the best,
Avinash


On 12 September 2013 05:58, Pj Dias <pjdias87@gmail.com> wrote:

> Hi. N.O.
>
> In my opinion, the best suitable tool for that objective is a network
> exploration software like cytoscape.
>
> 1) Install cytoscape version 2.8.3, and add the toolbox cySBML.
>
> 2) Obtain the SBML file for the metabolic reconstruction of the organism
> you are studying
>
> 3) search your metabolite, click in it, and then use the cytoscape option
> to select the adjacent nodes of selected node. That will give you the
> reactions your metabolites is involved.
>
> 4) By using again the option select adjacent nodes of selected node, you
> will obtain your gene names.
>
> Regards
>
> Pj
>
>
> 2013/9/12 n omranian <n_omranian@yahoo.com>
>
> >
> >
> > Hi,
> >
> > I have a question, does anybody know a package in bioconductor or any
> tool
> > (for Arabidopsis thaliana) that  if I give a name of metabolite, I get
> all
> > the genes (known so far) that involved in the reactions in which my
> > specific metabolite is playing a role as substrate or product?
> >
> > Thanks a lot.
> > Best,
> > N.O.
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> >
>
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