Hi Chris

There is another function: lumiR.batch for you purpose. You can define the
samples you want to input in the "sampleInfoFile" parameter. Check the help
of "lumiR.batch" for more details.


Pan


On Wed, Aug 28, 2013 at 6:47 AM, Chris [guest] <guest@bioconductor.org>wrote:

>
> Hi, I was wondering whether it was possible to only import the first few
> samples of an array using the lumiR or lumiR.batch function.
>
>  -- output of sessionInfo():
>
> > sessionInfo()
> R version 3.0.1 (2013-05-16)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] parallel  stats     graphics  grDevices utils     datasets  methods
> base
>
> other attached packages:
> [1] lumi_2.12.0        Biobase_2.20.1     BiocGenerics_0.6.0
>
> loaded via a namespace (and not attached):
>  [1] affy_1.38.1           affyio_1.28.0         annotate_1.38.0
> AnnotationDbi_1.22.6  beanplot_1.1          BiocInstaller_1.10.3
>  Biostrings_2.28.0     colorspace_1.2-2
>  [9] DBI_0.2-7             GenomicRanges_1.12.5  grid_3.0.1
>  illuminaio_0.2.0      IRanges_1.18.3        KernSmooth_2.23-10
>  lattice_0.20-15       limma_3.16.7
> [17] MASS_7.3-26           Matrix_1.0-12         matrixStats_0.8.5
> mclust_4.2            methylumi_2.6.1       mgcv_1.7-22
> minfi_1.6.0           multtest_2.16.0
> [25] nleqslv_2.0           nlme_3.1-109          nor1mix_1.1-4
> preprocessCore_1.22.0 R.methodsS3_1.4.4     RColorBrewer_1.0-5
>  reshape_0.8.4         RSQLite_0.11.4
> [33] siggenes_1.34.0       splines_3.0.1         stats4_3.0.1
>  survival_2.37-4       XML_3.95-0.2          xtable_1.7-1
>  zlibbioc_1.6.0
>
> --
> Sent via the guest posting facility at bioconductor.org.
>

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