I'm pretty sure that you can just pass a GRanges to the facets argument,
but I haven't tried it.


On Sun, Aug 4, 2013 at 4:50 PM, Cook, Malcolm <MEC@stowers.org> wrote:

>  Hi,
> I am unable to find any examples of facet_gr argument to autoplot.
>
> It is mentioned in
> http://bioconductor.org/packages/2.12/bioc/manuals/ggbio/man/ggbio.pdf on
> page 9 as:
>
> Sometime, we need to view different regions, so we also have a facet_gr
> argument which
> accept a GRanges. If this is provided, it will override the default
> seqnames and use provided
> region to facet the graphics, this might be useful for different gene
> centric views.
>
>
>  However there is no further example of its use, and it does not appear in
> the list of formals, and it does not appear at all in
> http://bioconductor.org/packages/2.12/bioc/vignettes/ggbio/inst/doc/ggbio.pdf
>
>  And the only google hits suggest this feature is out deprecated.
>
>  Am I missing something?
>
>  Is there a contemporary equivalent?  Is there some way to facet on
> genomic range?  Any examples out there?
>
>  Thanks,
>
> ~ malcolm_cook@stowers.org
>

	[[alternative HTML version deleted]]

