Or, perhaps running a 64-bit version of R would do the trick (assuming the
OP) is on a 64bit machine

Also the aroma affeyrix suite of packages might be helpful

HTH,
-Steve


On Monday, July 15, 2013, James W. MacDonald wrote:

> You can solve the problem by installing more RAM or using a computer that
> already has more RAM.
>
> Best,
>
> Jim
>
>
>
> On 7/15/2013 8:36 AM, chittabrata mal wrote:
>
>> Dear List,
>> During GCRMA using simpleAffy package for some array data (&gt;30) it is
>> showing:
>>
>> "Error: cannot allocate vector of size 372.1 Mb"
>>
>> R environment is as follows:
>> R version 3.0.1 (2013-05-16) -- "Good Sport"
>> Copyright (C) 2013 The R Foundation for Statistical Computing
>> Platform: i686-pc-linux-gnu (32-bit)
>>
>> The system has 4GB RAM. During running the GCRMA free memory size is more
>> than 372.1 Mb.
>>
>> How may I solve this problem?
>>
>> With regards.
>>
>>         [[alternative HTML version deleted]]
>>
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>>
>
> --
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
>
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>


-- 
Steve Lianoglou
Computational Biologist
Bioinformatics and Computational Biology
Genentech

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