Hi all,

I have a problem when installing the R-package VariantAnnotation, I get the following error message:

Error : object ?get_xsbasetypes_conversion_lookup? is not exported by 'namespace:Biostrings'
ERROR: lazy loading failed for package ‘GenomicFeatures’
* removing ‘/home/als/R/x86_64-unknown-linux-gnu-library/2.15/GenomicFeatures’

There have been several reports with this error message, but they all relate to development version of Bioconductor, which I’m not using.

Here’s my session info:

> sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=da_DK.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=da_DK.UTF-8        LC_COLLATE=da_DK.UTF-8
 [5] LC_MONETARY=da_DK.UTF-8    LC_MESSAGES=da_DK.UTF-8
 [7] LC_PAPER=C                 LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=da_DK.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.8.3

loaded via a namespace (and not attached):
[1] tools_2.15.1

Suggestions are greatly appriciated!

All the best,

Thomas Als

------------------------------------------------------
Thomas Damm Als, PhD
Associate Professor
Department of Biomedicine
Aarhus University
Building 1243
Wilhelm Meyers Allé 4
8000 Aarhus C, Denmark
Direct: +45 8716 8498
email: tda@hum-gen.au.dk
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