Hi all,

I want to ask a question about using DEXSeq.

I have two technical replicates for one sample and I need to merge them to
get the exon counts.

I've mapped them and get the sam files, can I just merge them as :

cat 1.sam 2.sam > merged.sam

and then sort it: sort -k1,1 -k2,2n merged.sam > merged.sorted.sam

Then I use this merged.sorted.sam on dexseq_counts.py to get the exon
counts.

Is that Ok for my process?


Thanks,

Cam

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