This is probably an incompatibility between the version of libsbml used by
the build machines for compiling the package and the version installed on
your system. Maybe Dan can figure out the version on the build machines?

Michael




On Wed, May 29, 2013 at 6:32 AM, Hannes Hettling [guest] <
guest@bioconductor.org> wrote:

>
> Dear all,
>
> we have a problem with installing rsbml on MacOS using libsbml 3.4.1.
>
> The error message (pasted below) is similar to the one in an older post:
>
> http://article.gmane.org/gmane.science.biology.informatics.conductor/33187/match=rsbml
>
> Error : .onLoad failed in loadNamespace() for 'rsbml', details:
>   call: dyn.load(file, DLLpath = DLLpath, ...)
>   error: unable to load shared object
> '/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rsbml/libs/x86_64/rsbml.so':
>
> dlopen(/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rsbml/libs/x86_64/rsbml.so,
> 6): Symbol not found: _ASTNode_addChild
>   Referenced from:
> /Library/Frameworks/R.framework/Versions/2.15/Resources/library/rsbml/libs/x86_64/rsbml.so
>   Expected in: dynamic lookup
>
> We set the environment variables LIBSBML3_CFLAGS=/usr/local/lib/ and
> LIBSBML3_LIBS=/usr/local/include/ and the directories contain the library
> files and the headers, respectively.
>
> Unfortunately, we are not able to build the package from source, since we
> cannot get access to Xcode (development tools) on that machine.
>
> With which sbml version was the current macos rsbml package compiled?
>
> Hope someone can help us,
> many thanks in advance,
>
> Farah and Hannes
>
>  -- output of sessionInfo():
>
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] C/UTF-8/C/C/C/C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocGenerics_0.4.0  BiocInstaller_1.8.3
>
> loaded via a namespace (and not attached):
> [1] graph_1.36.2  stats4_2.15.1 tools_2.15.1
>
> --
> Sent via the guest posting facility at bioconductor.org.
>

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