Dear All
I have question about a suitable  R package for enrichment score test or the test to find significant Gene ontology (GO)  for in a set of gene. I trying with GOstat package, but I could not find any correct functions. For instance, I have different genes (Locus ID) and a gene have many GOs (as below) , I want to test which GOs are important to the whole gene set?  Are there any methods can also use P-value to get better ranking for GO?
Thank you very much for your suggestions
Best regards
Duy Ngoc Do


locusID

go_id

pvalue

100037271

GO_0031953

0.045472508

100037271

GO_0006955

0.045472508

100037271

GO_0050427

0.045472508

100037271

GO_0006091

0.045472508

100037271

GO_0005886

0.045472508

100037271

GO_0006796

0.045472508

100037271

GO_0009143

0.045472508

100037271

GO_0030308

0.045472508

100037271

GO_0030279

0.045472508

100037271

GO_0008152

0.045472508

100037271

GO_0030505

0.045472508

100037271

GO_0046627

0.045472508

100037271

GO_0046325

0.045472508

100037271

GO_0005615

0.045472508

100037271

GO_0030730

0.045472508

100037271

GO_0046872

0.045472508

100037271

GO_0046849

0.045472508

100127151

GO_0048388

0.032101723

100127151

GO_0016021

0.032101723

100127151

GO_0009986

0.032101723

100127151

GO_0005783

0.009236599

100127151

GO_0006810

0.009236599

100127151

GO_0005737

0.009236599

100127151

GO_0001822

0.009236599

100127151

GO_0016020

0.009236599

100127151

GO_0005215

0.009236599

100127151

GO_0048388

0.009236599

100127151

GO_0016021

0.009236599

100127151

GO_0009986

0.009236599

100127151

GO_0005783

0.033442664

100127151

GO_0006810

0.033442664

100127151

GO_0005737

0.033442664

100127151

GO_0001822

0.033442664

100127151

GO_0016020

0.033442664

100127151

GO_0005215

0.033442664

100127151

GO_0048388

0.033442664

100127151

GO_0016021

0.033442664

100127151

GO_0009986

0.033442664

100127151

GO_0005783

0.031715337

100127151

GO_0006810

0.031715337

100127151

GO_0005737

0.031715337

100517601

GO_0050709

0.046874416

100517601

GO_0016021

0.046874416

100517601

GO_0005886

0.046874416

100517601

GO_0004252

0.046874416

100517601

GO_0005789

0.046874416

100517601

GO_0006508

0.046874416

100517632

GO_0016021

0.040394998

100517632

GO_0050911

0.040394998

100517632

GO_0004984

0.040394998

100517632

GO_0004871

0.040394998

100517632

GO_0007165

0.040394998

100517632

GO_0004930

0.040394998

100517632

GO_0007186

0.040394998

100517632

GO_0016021

0.015823229

100517632

GO_0050911

0.015823229

100517632

GO_0004984

0.015823229

100517632

GO_0004871

0.015823229

100517632

GO_0007165

0.015823229

100517632

GO_0004930

0.015823229

100517632

GO_0007186

0.015823229

100517634

GO_0008137

0.005083894

100517634

GO_0005747

0.005083894

100517634

GO_0005739

0.005083894

100517634

GO_0005743

0.005083894

100517634

GO_0042773

0.005083894

100517634

GO_0008137

0.008492477

100517634

GO_0005747

0.008492477

100517634

GO_0005739

0.008492477

100517634

GO_0005743

0.008492477

100517634

GO_0042773

0.008492477

100517640

GO_0008152

0.03197881

100517640

GO_0003824

0.03197881

100517640

GO_0008152

0.049149222

100517640

GO_0003824

0.049149222

100517640

GO_0008152

0.040615929

100517640

GO_0003824

0.040615929

100517643

GO_0016021

0.032782581

100517643

GO_0055085

0.032782581

100517643

GO_0005515

0.032782581

100517655

GO_0004930

0.017394958

100517655

GO_0004871

0.017394958

100517655

GO_0007165

0.017394958

100517655

GO_0007186

0.017394958

100517655

GO_0016021

0.017394958

100517655

GO_0004930

0.012101767

100517655

GO_0004871

0.012101767

100517655

GO_0007165

0.012101767

100517655

GO_0007186

0.012101767

100517655

GO_0016021

0.012101767

100517655

GO_0004930

0.014099601

100517655

GO_0004871

0.014099601

100517655

GO_0007165

0.014099601

100517655

GO_0007186

0.014099601

100517655

GO_0016021

0.014099601

100517655

GO_0004930

0.011793795

100517655

GO_0004871

0.011793795

100517655

GO_0007165

0.011793795

100517655

GO_0007186

0.011793795

100517655

GO_0016021

0.011793795

100517656

GO_0005509

0.0435843

100517656

GO_0006508

0.0435843

100517656

GO_0016787

0.0435843

100517656

GO_0008234

0.0435843

100517656

GO_0005622

0.0435843

100517656

GO_0008233

0.0435843

100517656

GO_0004198

0.0435843

100517678

GO_0005515

0.004841574

100517678

GO_0005515

0.005919692

100517680

GO_0016020

0.048916913

100517680

GO_0006814

0.048916913

100517680

GO_0015385

0.048916913

100517680

GO_0006810

0.048916913

100517680

GO_0015299

0.048916913

100517680

GO_0016021

0.048916913

100517680

GO_0006885

0.048916913

100517680

GO_0055085

0.048916913

100517680

GO_0006811

0.048916913

100517680

GO_0006812

0.048916913

100517685

GO_0004871

0.03224806

100517685

GO_0007202

0.03224806

100517685

GO_0004930

0.03224806

100517685

GO_0045671

0.03224806

100517685

GO_0005887

0.03224806

100517685

GO_0007186

0.03224806

100517685

GO_0045453

0.03224806

100517685

GO_0004949

0.03224806

100517685

GO_0007165

0.03224806

100517685

GO_0070374

0.03224806

100517685

GO_0016021

0.03224806

100517685

GO_0038171

0.03224806

100517685

GO_0035025

0.03224806

100517698

GO_0006468

0.005615138

100517698

GO_0004672

0.005615138

100517698

GO_0005801

0.005615138

100517698

GO_0005794

0.005615138

100517698

GO_0005524

0.005615138

100517698

GO_0005793

0.005615138

100517698

GO_0016772

0.005615138

100517698

GO_0006890

0.005615138

100517698

GO_0005737

0.005615138

100517698

GO_0030126

0.005615138

100517698

GO_0005515

0.005615138

100517698

GO_0006468

0.032752611

100517698

GO_0004672

0.032752611

100517698

GO_0005801

0.032752611

100517698

GO_0005794

0.032752611

100517698

GO_0005524

0.032752611

100517698

GO_0005793

0.032752611

100517698

GO_0016772

0.032752611

100517698

GO_0006890

0.032752611

100517698

GO_0005737

0.032752611

100517698

GO_0030126

0.032752611

100517698

GO_0005515

0.032752611

100517698

GO_0006468

0.008615648

100517698

GO_0004672

0.008615648

100517698

GO_0005801

0.008615648

100517698

GO_0005794

0.008615648

100517698

GO_0005524

0.008615648

100517698

GO_0005793

0.008615648


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