source("http://bioconductor.org/biocLite.R");
biocLite("human.db0");
biocLite("AnnotationDbi");
biocLite("AnnotationForge");
library(human.db0);
library(AnnotationDbi);
library(AnnotationForge);
> available.chipdbschemas();
> dir.create("primeview");
>
populateDB("HUMANCHIP_DB",affy=F,prefix="primeview",fileName="primeviewHumanGeneExprs.txt",metaDataSrc=c("DBSCHEMA"="HUMANCHIP_DB","ORGANISM"="Homo
sapiens","SPECIES"="Human","MANUFACTURER"="Affymetrix","CHIPNAME"="PrimeView
Human Gene Expression Array","MANUFACTURERURL"="http://www.affymetrix.com
"),baseMapType="eg",outputDir="primeview");
> seed<-new("AnnDbPkgSeed",Package =
"primeview.db",Version="1.0.0",PkgTemplate="HUMANCHIP.DB",AnnObjPrefix="primeview");
>
makeAnnDbPkg(seed,file.path("primeview","primeview.sqlite"),dest_dir="primeview");
Error in match(x, table, nomatch = 0L) :
object 'doc_template_names' not found
> sessionInfo()
R version 3.0.0 (2013-04-03)
Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base

other attached packages:
[1] AnnotationForge_1.2.0 org.Hs.eg.db_2.9.0 RSQLite_0.11.3 DBI_0.2-5
human.db0_2.9.0
[6] AnnotationDbi_1.22.1 Biobase_2.20.0 BiocGenerics_0.6.0

loaded via a namespace (and not attached):
[1] IRanges_1.18.0 stats4_3.0.0 tools_3.0.0


-- 
shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute for Plant Research
Cornell University
Tower Road, Ithaca, NY 14853-1801
Office phone: 1-607-254-1267(day)
Official email:sg839@cornell.edu
Facebook:http://www.facebook.com/profile.php?id=100001986532253

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