On Wed, Apr 10, 2013 at 9:18 PM, Martin Morgan <mtmorgan@fhcrc.org> wrote:

> On 04/10/2013 05:43 PM, Kasper Daniel Hansen wrote:
>
>> Right now, I get that R-devel uses BiocInstaller 1.10.0 and points to
>> Bioconductor 2.12, the same as R-3.0.  Shouldn't it point to Bioconductor
>> 2.13 for R-devel?
>>
>
> Hi Kasper -- remember that, because R is now on a yearly release cycle,
> we're using R-3.0.x for both release and devel for the next ~6 months, see
>
>   http://bioconductor.org/**developers/useDevel/<http://bioconductor.org/developers/useDevel/>
>
> and after
>
>   source("http://bioconductor.**org/biocLite.R<http://bioconductor.org/biocLite.R>
> ")
>   useDevel()
>

Point taken; Bioc devel should be using the R-3-0-branch.

Nevertheless, if I use R-devel, I should be getting the Bioc devel version,
which I don't.  I have
R Under development (unstable) (2013-04-10 r62546) -- "Unsuffered
Consequences"
Copyright (C) 2013 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin12.3.0 (64-bit)

which is from right now.

Kasper



>
> But actually, I think your R-devel is a little out of date and that with
> something more recent than
>
> ------------------------------**------------------------------**
> ------------
> r62488 | ligges | 2013-04-03 16:12:25 -0700 (Wed, 03 Apr 2013) | 1 line
>
> update BioC devel to 2.13
> ------------------------------**------------------------------**
> ------------
>
> you'll get
>
> > source("http://bioconductor.**org/biocLite.R<http://bioconductor.org/biocLite.R>
> ")
> Installing package into ‘/home/mtmorgan/R/x86_64-**
> unknown-linux-gnu-library/3.1’
> (as ‘lib’ is unspecified)
> trying URL 'http://www.bioconductor.org/**packages/2.13/bioc/src/**
> contrib/BiocInstaller_1.11.0.**tar.gz<http://www.bioconductor.org/packages/2.13/bioc/src/contrib/BiocInstaller_1.11.0.tar.gz>
> '
>
> ...
>
> Martin
>
>
>
>> Best,
>> Kasper
>>
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>>
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>>
>
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