Dear all,

I have been using the locateVariants function in the VariantAnnotation
package. It has been great and we are now in the process of writing the
methods section.

May I know how the intergenic SNPs were defined? What is the limit upstream
and downstream to define PRECEDEID and FOLLOWID. I check the manuals and
mailing list without much luck.

This is of less importance but is there a way to adjust these
definition/limit if we want to do so in future? Thank you.

Regards, Adai

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