Oddly enough, the paper from UCSD with Illumina's folks on it (*) used the
IlluminaHumanMethylation450k.db package (which I am currently rebuilding to
have a startup message about toggleProbes()) to annotate both CpG islands
and GO terms.

(*)
http://idekerlab.ucsd.edu/publications/Documents/Hannum_MolCell_2012.pdf


On Fri, Mar 29, 2013 at 8:49 AM, Fabrice Tourre <fabrice.ciup@gmail.com>wrote:

> Dear list,
>
> In the annotation file of Infinium HumanMethylation450 BeadChip,
>
> http://support.illumina.com/documents/MyIllumina/b78d361a-def5-4adb-ab38-e8990625f053/HumanMethylation450_15017482_v.1.2.csv
>
> for each probe set, they do not have annotation for GO terms, pathways.
>
> As they have done in the annotation file: HG-U133_Plus_2.na32.annot.csv.
>
> Is there some bioconductor package to annotated the Infinium
> HumanMethylation450 probes? Given a probe, feed back the GO terms and
> pathways.
>
> Thank you very much in advance.
>
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>



-- 
*A model is a lie that helps you see the truth.*
*
*
Howard Skipper<http://cancerres.aacrjournals.org/content/31/9/1173.full.pdf>

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