dear Christian,

can you explain me how to set the environment variables? I found the file
.bashrc, I understand that I need to add the path  to this file. Is it the
/usr/local?
Is it like this? $PATH=/usr/local ?

Thanks for the help

On Tue, Mar 26, 2013 at 6:43 PM, cstrato <cstrato@aon.at> wrote:

> Dear Andreia,
>
> As Steve has already kindly mentioned, package xps requires installation
> of the ROOT framework.
>
> My only additional comment is, that I would suggest to install ROOT not in
> /usr/local/ which is not visible in the Mac Finder but in any directory you
> want and which you can also see in the Finder. You need to set the
> environment variables in '.bashrc' in your home directory.
>
> Best regards,
> Christian
>
>
>
> On 3/26/13 4:50 AM, Andreia Fonseca wrote:
>
>> Dear all,
>>
>> I am trying to install xps and I am getting the following error:
>>
>> library("xps")
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>    unable to load shared object
>> '/Library/Frameworks/R.**framework/Versions/2.15/**
>> Resources/library/xps/libs/**i386/xps.so':
>>
>> dlopen(/Library/Frameworks/R.**framework/Versions/2.15/**
>> Resources/library/xps/libs/**i386/xps.so,
>> 6): Library not loaded: /usr/local/root/lib/root/**libGui.so
>>    Referenced from:
>> /Library/Frameworks/R.**framework/Versions/2.15/**
>> Resources/library/xps/libs/**i386/xps.so
>>    Reason: image not found
>> Error: package/namespace load failed for 'xps'
>>
>> can someone help?
>>
>> I have downloaded the file using biocLite
>>
>>  biocLite("xps")
>>>
>> BioC_mirror: http://bioconductor.org
>> Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15.
>> Installing package(s) 'xps'
>> trying URL '
>> http://bioconductor.org/**packages/2.11/bioc/bin/macosx/**
>> leopard/contrib/2.15/xps_1.18.**1.tgz<http://bioconductor.org/packages/2.11/bioc/bin/macosx/leopard/contrib/2.15/xps_1.18.1.tgz>
>> '
>> Content type 'application/x-gzip' length 7208382 bytes (6.9 Mb)
>> opened URL
>> ==============================**====================
>> downloaded 6.9 Mb
>>
>> tar: Failed to set default locale
>>
>> The downloaded binary packages are in
>>
>> /var/folders/mg/**mgYnPlsvH50tWM6oW27ypE+++TI/-**
>> Tmp-//RtmpubosnY/downloaded_**packages
>>
>> the sessionInfo is the following:
>>
>> sessionInfo()
>> R version 2.15.3 (2013-03-01)
>> Platform: i386-apple-darwin9.8.0/i386 (32-bit)
>>
>> locale:
>> [1] C
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> other attached packages:
>> [1] affy_1.36.1         Biobase_2.18.0      BiocGenerics_0.4.0
>> BiocInstaller_1.8.3
>>
>> loaded via a namespace (and not attached):
>> [1] affyio_1.26.0         preprocessCore_1.20.0 tools_2.15.3
>> zlibbioc_1.4.0
>>
>>
>> thnaks for the help,
>>
>> Andreia
>>
>>
>>
>>
>> ------------------------------**------------------------------**
>> ------------------------------**-----
>> Andreia J. Amaral, PhD
>> BioFIG - Center for Biodiversity, Functional and Integrative Genomics
>> Instituto de Medicina Molecular
>> University of Lisbon
>> Tel: +352 217500000 (ext. office: 28253)
>> email:andreiaamaral@fm.ul.pt ; andreiaamaral@fc.ul.pt
>>
>>         [[alternative HTML version deleted]]
>>
>> ______________________________**_________________
>> Bioconductor mailing list
>> Bioconductor@r-project.org
>> https://stat.ethz.ch/mailman/**listinfo/bioconductor<https://stat.ethz.ch/mailman/listinfo/bioconductor>
>> Search the archives: http://news.gmane.org/gmane.**
>> science.biology.informatics.**conductor<http://news.gmane.org/gmane.science.biology.informatics.conductor>
>>
>>


-- 
---------------------------------------------------------------------------------------------
Andreia J. Amaral, PhD
BioFIG - Center for Biodiversity, Functional and Integrative Genomics
Instituto de Medicina Molecular
University of Lisbon
Tel: +352 217500000 (ext. office: 28253)
email:andreiaamaral@fm.ul.pt ; andreiaamaral@fc.ul.pt

	[[alternative HTML version deleted]]

