Hi,

Is there a maximum number of sequence files (chromosomes or contigs in my case) that can be fed to the forgeBSgenomeDataPkg() function? I am trying to build a BSgenome for C. brenneri and C. japonica available from EnsemblGenomes. These genomes are made from thousands of contigs with genes annotated to them. Currently, I get the following error when running "Error: Line longer than buffer size" when running on the full set of contigs. However, it works fine on a seed file containing a subset of the contigs (I can forge a genome with 450 contigs but not with 460!)

Any suggestions will be appreciated (I can provide a toy example but I am not sure what would be the merit of it at this point)

Thanks

--  Marco Blanchette, Ph.D.
Stowers Institute for Medical Research
1000 East 50th Street
Kansas City MO 64110
www.stowers.org

Tel: 816-926-4071
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