Dear all,
I was stopped by the following error when using Package: clusterProfiler on R 2.15.3 on windows 7.
Error in xzfile(file, “wb”, compression = 9) : Cannot open the connection
In addition: warning message:
  cannot initialize lzma encoder, error 5
The too functions: Gff2GeneTable() and buildGOmap() are not working because of this error.
 
Could you please let me know how to fix these error.
 [source of the package: http://bioconductor.org/packages/2.11/bioc/html/clusterProfiler.html]
 
Here are what I typed in R:
---------------------------------------------------------------
R version 2.15.3 (2013-03-01) -- "Security Blanket"
Copyright (C) 2013 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i386-w64-mingw32/i386 (32-bit)
 
> suppressPackageStartupMessages(require(clusterProfiler))
> Gff2GeneTable(“NC_007297.gff”)
Reading NC_007297.gff: found 3989 rows with classes:...
Error in xzfile(file, "wb", compression = 9) : cannot open the connection
In addition: Warning message:
In xzfile(file, "wb", compression = 9) :
  cannot initialize lzma encoder, error 5
 
> buildGOmap(gomap)
Error in xzfile(file, "wb", compression = 9) : cannot open the connection
In addition: Warning message:
In xzfile(file, "wb", compression = 9) :
  cannot initialize lzma encoder, error 5
-----------------------------------------------------------------

2013-03-19



Ming Wang, PhD
Room 8612,
The Centre for Structural and Molecular Biology,
Institute of Biophysics, Chinese Academy of Sciences
15 Datun Road, Chaoyang District, Beijing 100101, China
Email: wangm08@yeah.net
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