Dear all,
I have a couple of questions about the plots outputted by dexseq package.
1)In the bottom part of the transcript plot there are several combinations
of exons join: Are they all possible combinations of alternative splicing?
2)I am interested to annotate most significance exons, querying PFAM and
SMART databases according with the paper "Detecting differential usage of
exons from RNA-Seq data", supplementary figure S4. How did you compute them?

Thanks in advance

-- 
Regards,
            Vincenzo

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