Hello,

I am using biomaRt.  I want to retrieve transcript start and stop info based on the NCBIM37 (mm9) build using getBM.  I can't find this annotation in listMarts(archive =T).   Is anyone aware of a simple solution?

Thank you.

best wishes,
Chris


> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] edgeR_3.0.8          limma_3.14.1         rtracklayer_1.18.0   biomaRt_2.14.0       GenomicRanges_1.10.5 IRanges_1.16.4       BiocGenerics_0.4.0  
[8] Gviz_1.2.0          

loaded via a namespace (and not attached):
 [1] annotate_1.36.0        AnnotationDbi_1.20.2   Biobase_2.18.0         Biostrings_2.26.2      biovizBase_1.6.0       bitops_1.0-4.2        
 [7] BSgenome_1.26.1        cluster_1.14.3         colorspace_1.2-0       DBI_0.2-5              DESeq_1.10.1           dichromat_1.2-4       
[13] genefilter_1.40.0      geneplotter_1.36.0     GenomicFeatures_1.10.0 Hmisc_3.10-1           labeling_0.1           lattice_0.20-10       
[19] munsell_0.4            parallel_2.15.2        plyr_1.7.1             RColorBrewer_1.0-5     RCurl_1.95-3           Rsamtools_1.10.1      
[25] RSQLite_0.11.2         scales_0.2.2           splines_2.15.2         stats4_2.15.2          stringr_0.6.1          survival_2.36-14      
[31] tools_2.15.2           XML_3.95-0.1           xtable_1.7-0           zlibbioc_1.4.0     




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