Hi,

I am interested in trying to detect the intron retention in RNA-Seq I was
wondering if anyone how ever tried to apply DEXSeq to looking for
differential intron usage between two groups of samples. It seems like an
ideal software that could detect for this given that the features are just
introns now instead of exons. Or does anyone else recommend any other
Bioconductor package that looks for differential intron retention?

Thanks,

Fong

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