Just realized some typo in the subject of previous post. So would like to raise this question again since nobody answer it last time. This is relevant to usage of GOstat package with unsupported model organism.

Thanks.


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To: "bioconductor@r-project.org" <bioconductor@r-project.org> 
Sent: Wednesday, January 16, 2013 9:38 AM
Subject: question about "evidence cole" in data.frame from GOstats packages with unsupported model organisms 


I am planning to use read.table to create the objects that feed to GOFrame. The manual says that the three columns are required, GO IDs, evidence code and gene IDs. I think I understand the first and third column, but what information should I put in evidence code?

For example I have the following in text file:
---------------------------------

GO:0002576    ***    gene1

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Does it work?
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