Hi Hervé,

thanks for the reply.
Indeed, at first I named my genome package according to the nomenclature
but I didn't realize that the underscore was causing the malfunctioning. I
changed the name to "BSgenome" and apparently I made things worse.
I'll give it a try following your advice.

Best,
Sara

On Fri, Jan 18, 2013 at 9:09 PM, Hervé Pagès <hpages@fhcrc.org> wrote:

> Hi Sara,
>
> I'm not sure what the problem is but I would suggest you try renaming
> your package first. I think having an _ (underscore) in the name is not
> supported and is likely to cause problems.
>
> Cheers,
> H.
>
>
> On 01/16/2013 07:26 AM, Sara Castelletti wrote:
>
>> Hi everyone,
>>
>> I have been trying to create a BSgenome data package for maize (as it is
>> not available in the BSgenome package).
>> I have prepared the seed file and downloaded the fasta sequences and then
>> I
>> proceeded to forge the genome.
>>
>> After typing
>>
>> R CMD check "path/to/my/tarball"
>>
>> the installation failed and the error file goes like this (sorry, it's in
>> French, but I think the translation of the error message is "node stack
>> overflow")
>>
>> * installing *source* package 'BSgenome_zm'
>> ** R
>> ** inst
>> ** preparing package for lazy loading
>> Error in match.fun(FUN) : pile de noeuds dborde vers le haut
>> ERROR: lazy loading failed for package 'BSgenome_zm'
>> * removing
>>
>> I'd appreciate some help to understand what's wrong.
>> Thanks in advance.
>>
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> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
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