Hi,

Has anyone ever had a case where a SNP was not found in
SNPlocs.Hsapiens.dbSNP.
20120608, but is found in dbSNP 137?  I am having this problem with SNP
rs7775397.

> library(SNPlocs.Hsapiens.dbSNP.20120608)
> rsidsToGRanges('rs7775397')
Error in .snpid2rowidx(x, snpid) : SNP id(s) not found: 7775397

Thanks,
Christina

> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=C                 LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] datasets  utils     grDevices graphics  stats     methods   base

other attached packages:
[1] SNPlocs.Hsapiens.dbSNP.
20120608_0.99.8
[2] BSgenome_1.26.1
[3] Biostrings_2.26.2
[4] GenomicRanges_1.10.5
[5] IRanges_1.16.4
[6] BiocGenerics_0.4.0

loaded via a namespace (and not attached):
[1] parallel_2.15.2 stats4_2.15.2

-- 
Christina Chaivorapol, Ph.D.
Genentech, Inc.
Bioinformatics & Computational Biology

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