And there's the SortableHTMLTables package which deals specifically with
sortable data tables.

Michael


On Fri, Jan 11, 2013 at 8:03 AM, Sean Davis <sdavis2@mail.nih.gov> wrote:

> On Fri, Jan 11, 2013 at 10:19 AM, Michael Lawrence
> <lawrence.michael@gene.com> wrote:
> > The package is extensible to the point that you could simply create a new
> > type of report that is output as some wiki language, so it wouldn't be
> > necessary to fork or modify ReportingTools. If there are internal
> utilities
> > for generating data tables that might be usefully shared, they could be
> > exposed, or at least factored out for ":::" access.
>
> There are also tools like the ascii package that can output various R
> data types (including data.frames) in various formats
> (markdown/pandoc, asciidoc, rst, org, textile, txt2tags).
>
> Sean
>
>
> > On Fri, Jan 11, 2013 at 1:02 AM, Xavier de Pedro <
> xavier.depedro@vhir.org>wrote:
> >
> >> Dear Josh & co.:
> >>
> >> Thanks for producing such a package, it looks promising indeed!
> >>
> >> I see that it uses jquery data tables, and the live filtering of the
> data
> >> is very fast (nice!).
> >> I have a few quick questions, after a quick review of your vignette and
> >> examples:
> >>
> >> Have you experienced any issues when the data set contained in the
> browser
> >> is very large (regardless that you set the browser to display just 10
> >> records at a time; I understand that the whole data set is loaded in the
> >> browser)?
> >>
> >> And in my relaxed todo list (without hurries) I had the idea to create a
> >> similar package to produce wiki syntax for tables from R data frames,
> and
> >> to display png (or svg) images within pages to be displayed through wiki
> >> engines (with it's appropriated syntax for the wiki engine of
> interest). A
> >> few years ago I had to do that and I produced some custom function 'ad
> hoc'
> >> without releasing it (yet) in any R package. In our example, we run r
> >> scripts through Tiki (wiki) pages, through PluginR, but the output is
> >> either bare text (so far) or images (png or svg), and any modification
> is
> >> handled by R commands by hand. And a function to produce the "Fancy
> Tables"
> >> that Tiki can produce with "JQuery Sortable Tables" is needed (
> >> http://doc.tiki.org/**PluginFancyTable<
> http://doc.tiki.org/PluginFancyTable>). I foresee that maybe the
> datatable jquery plugin could be even better
> >> for that, since it contains pagination and live filtering, which can be
> >> very very handy!.
> >>
> >> And maybe you are open to receive improvements/extensions to your
> package
> >> to support other ways to produce the tables required for better
> integration
> >> for wiki engines such as Tiki? Or should I fork from your package?
> >>
> >> Thanks in advanced, and congratulations for the generic package that you
> >> created.
> >>
> >> Xavier
> >>
> >>
> >> On 11/01/13 00:49, Josh Kaminker wrote:
> >>
> >>> Hi all,
> >>>
> >>> We present a new R package,
> >>> ReportingTools<http://www.**
> bioconductor.org/packages/**devel/bioc/html/*
> >>> *ReportingTools.html<
> http://www.bioconductor.org/packages/devel/bioc/html/ReportingTools.html>
> >>> >,
> >>> for transforming the output of various Bioconductor packages into
> >>> interactive web pages.  We have found this package very useful in our
> >>> collaborations with both bench and other computational scientists.
> >>>  Examples
> >>> and instructions for generating output using this package can be found
> >>> here: http://research-pub.gene.com/**ReportingTools/<
> http://research-pub.gene.com/ReportingTools/>
> >>>
> >>> With just three lines of user code, rich HTML documents can be
> generated
> >>> from the result objects produced by several standard Bioconductor
> packages
> >>> including edgeR, limma, GOstats, and GSEAlm.  By default,
> ReportingTools
> >>> reports include hyperlinks to relevant external databases and are
> highly
> >>> interactive through the use of filtering and sorting options provided
> by
> >>> open source javascript libraries.  Supporting javascript and css
> libraries
> >>> are included with all reports, allowing them to be examined on a local
> >>> computer without a network connection.  Additionally, in-line graphics
> >>> have
> >>> been developed to accompany statistical results to allow convenient
> visual
> >>> inspection of underlying raw data.  ReportingTools output is highly
> >>> customizable and this package can be used equally well to share results
> >>> from automated pipeline processes or individual customized analyses.
> >>>
> >>> We are very interested in receiving your feedback including feature
> >>> requests for this package.
> >>>
> >>> Best regards,
> >>>
> >>> Josh Kaminker
> >>> Melanie Huntley
> >>> Jason Hackney
> >>> Jessica Larson
> >>> Christina Chaivorapol
> >>>
> >>>
> >>>
> >>
> >> --
> >> Xavier de Pedro Puente, Ph.D.
> >> Statistics and Bioinformatics Unit (UEB)
> >> High Technology Unit (UAT)
> >> Vall d'Hebron Research Institute (VHIR). Mediterranean Building
> >> Passeig de la Vall d'Hebron, 119-129
> >> 08035 Barcelona. Catalonia. Spain
> >>  Ph. +34 934894007 / Fax +34 934894015
> >> xavier.depedro@vhir.org
> >> http://ueb.vhir.org
> >>
> >>
> >> ______________________________**_________________
> >> Bioconductor mailing list
> >> Bioconductor@r-project.org
> >> https://stat.ethz.ch/mailman/**listinfo/bioconductor<
> https://stat.ethz.ch/mailman/listinfo/bioconductor>
> >> Search the archives: http://news.gmane.org/gmane.**
> >> science.biology.informatics.**conductor<
> http://news.gmane.org/gmane.science.biology.informatics.conductor>
> >>
> >
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