Hi all,

We present a new R package,
ReportingTools<http://www.bioconductor.org/packages/devel/bioc/html/ReportingTools.html>,
for transforming the output of various Bioconductor packages into
interactive web pages.  We have found this package very useful in our
collaborations with both bench and other computational scientists.  Examples
and instructions for generating output using this package can be found
here: http://research-pub.gene.com/ReportingTools/

With just three lines of user code, rich HTML documents can be generated
from the result objects produced by several standard Bioconductor packages
including edgeR, limma, GOstats, and GSEAlm.  By default, ReportingTools
reports include hyperlinks to relevant external databases and are highly
interactive through the use of filtering and sorting options provided by
open source javascript libraries.  Supporting javascript and css libraries
are included with all reports, allowing them to be examined on a local
computer without a network connection.  Additionally, in-line graphics have
been developed to accompany statistical results to allow convenient visual
inspection of underlying raw data.  ReportingTools output is highly
customizable and this package can be used equally well to share results
from automated pipeline processes or individual customized analyses.

We are very interested in receiving your feedback including feature
requests for this package.

Best regards,

Josh Kaminker
Melanie Huntley
Jason Hackney
Jessica Larson
Christina Chaivorapol


-- 
Josh Kaminker
Scientist
Department of Bioinformatics and Comp. Biology
Genentech Inc.
1 DNA Way
South San Francisco, CA 94080
tel.: +1 650 467 8921
fax: +1 650 225 5389

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