worked cleanly..I can see couple of hours of plotting being saved by ggbio
specially for our structural variation stuff.. Thanks for great support and
writing awesome documentation.

I am sure I will have more questions later.

-Abhi

On Wed, Jan 9, 2013 at 9:31 AM, Abhishek Pratap <apratap@lbl.gov> wrote:

> GMorning
>
> On Tue, Jan 8, 2013 at 10:42 PM, Tengfei Yin <yintengfei@gmail.com> wrote:
>
>> Hi Abhi,
>>
>> Do you wan to cytoband or not? do you want it to be embedded into tracks?
>>
> >cytoband not needed. I am not sure what you mean by embedded into tracks.
>
>>
>> if not, autoplot,Seqinfo could be used for that purpose, otherwise,
>> construct the GRanges with gieStain and name columns, I think it should be
>> in the ideogram chapter, function plotIdeogram would work for that purpose.
>>
> > I will try this today and get back
>
> Thanks!
> -Abhi
>
>>  Tengfei
>>
>>
>> On Tue, Jan 8, 2013 at 5:26 PM, Abhishek Pratap <apratap@lbl.gov> wrote:
>>
>>> Hi Tingfei
>>>
>>> Can you point me to an example for creating an ideogram for a genome
>>> that doesnt exist in UCSC.
>>>
>>> Thanks!
>>> -Abhi
>>>
>>>
>>
>>
>> --
>> Tengfei Yin
>> MCDB PhD student
>> 1620 Howe Hall, 2274,
>> Iowa State University
>> Ames, IA,50011-2274
>>
>>
>>
>

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