On Tue, Jan 8, 2013 at 12:12 PM, Abhishek Pratap <apratap@lbl.gov> wrote:

> Hi Guys
>
>
> I am looking at packages(in(preferred)/out of BioC) that can help me
> visualize structural variations in our analysis like inter/intra
> chromosomal translocations, inversions, deletions etc. For now I have
> looked at Circos which takes some data munging to get a plot ready. I have
> also glanced at ggbio but dint find an example to visualize intra
> chromosomal connections which are most interesting to us at this point.
>
> > So I was able to find something very similar in ggbio ...should have
looked at the full vignette before.  Would be happy to know what other
tools people are using.
(
http://www.bioconductor.org/packages/release/bioc/vignettes/ggbio/inst/doc/ggbio.pdf
)

-A

> Any pointers appreciated.
>
>
> best,
> -Abhi
>
> ------------------------------------
> Abhishek Pratap
> Bioinformatics Systems Analyst
> DOE- Joint Genome Institute
> Lawrence Berkeley National Lab
> Walnut Creek, CA
>

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