On Tue, Jan 8, 2013 at 3:03 PM, Tim Triche, Jr. <tim.triche@gmail.com>wrote:

> reload R and try it again.  you may need to use the version of biovizBase
> and ggbio in bioc-devel, I verified this morning that ideogram works as it
> says on the tin (plotting differentially methylated regions for another
> purpose)
>
> restart did the trick...thanks Tim

-Abhi

>
>
> On Tue, Jan 8, 2013 at 2:53 PM, Abhishek Pratap <apratap@lbl.gov> wrote:
>
>> I am getting the following error when I am trying to test plotting an
>> ideogram from the vignette. sessioninfo attached. -A
>>
>> library(biovizBase)
>> data(hg19IdeogramCyto)
>> hg19IdeogramCyto #this gives the output
>> plotIdeogram(hg19IdeogramCyto,"chr1",aspect.ratio=1/20)
>>
>> Error in get(x, envir = this, inherits = inh) :
>>   internal error -3 in R_decompress1In addition: Warning message:In
>>
>> get(x, envir = this, inherits = inh) :
>>   restarting interrupted promise evaluation
>>
>>
>>
>>
>>
>> sessionInfo()R version 2.15.2 (2012-10-26)
>>
>> Platform: x86_64-pc-linux-gnu (64-bit)
>>
>> locale:
>>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>>  [7] LC_PAPER=C                 LC_NAME=C
>>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] grid      stats     graphics  grDevices utils     datasets  methods
>> [8] base
>>
>> other attached packages:
>>  [1] biovizBase_1.6.2     ggbio_1.6.4          BiocInstaller_1.8.3
>>  [4] cummeRbund_2.0.0     Gviz_1.2.1           rtracklayer_1.18.2
>>  [7] fastcluster_1.1.7    reshape2_1.2.2       ggplot2_0.9.3
>> [10] RSQLite_0.11.2       DBI_0.2-5            GenomicRanges_1.10.5
>> [13] IRanges_1.16.3       BiocGenerics_0.4.0
>>
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>>
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>
>
>
> --
> *A model is a lie that helps you see the truth.*
> *
> *
> Howard Skipper<http://cancerres.aacrjournals.org/content/31/9/1173.full.pdf>
>

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