Hi Guys


I am looking at packages(in(preferred)/out of BioC) that can help me
visualize structural variations in our analysis like inter/intra
chromosomal translocations, inversions, deletions etc. For now I have
looked at Circos which takes some data munging to get a plot ready. I have
also glanced at ggbio but dint find an example to visualize intra
chromosomal connections which are most interesting to us at this point.

Any pointers appreciated.


best,
-Abhi

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Abhishek Pratap
Bioinformatics Systems Analyst
DOE- Joint Genome Institute
Lawrence Berkeley National Lab
Walnut Creek, CA

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