Dear All,

I recently tried to use the Biconductor Cloud AMI (RStudio).

I installed some packages and it was ok.
Then I installed the "gsl", "Rcmdr" and "MBCB"packages and it was not ok.

For the "Rcmdr" and "MBCB", the message was:
Warning in fun(libname, pkgname) : couldn't connect to display ":0"


For the "gsl", the message was:

Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help
* installing *source* package ‘gsl’ ...
** package ‘gsl’ successfully unpacked and MD5 sums checked
checking for gsl-config... no
configure: error: gsl-config not found, is GSL installed?
ERROR: configuration failed for package ‘gsl’
* removing ‘/home/ubuntu/R/library/gsl’
Warning in install.packages :
  installation of package ‘gsl’ had non-zero exit status

Here for the sessionInfo()
> sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C         LC_TIME=C            LC_COLLATE=C        
 [5] LC_MONETARY=C        LC_MESSAGES=C        LC_PAPER=C           LC_NAME=C           
 [9] LC_ADDRESS=C         LC_TELEPHONE=C       LC_MEASUREMENT=C     LC_IDENTIFICATION=C 

attached base packages:
[1] tcltk     stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] NormalGamma_0.1.0   histogram_0.0-23    optimx_2012.04.01   numDeriv_2012.9-1  
 [5] car_2.0-15          nnet_7.3-4          MASS_7.3-21         ffpe_1.2.0         
 [9] TTR_0.21-1          xts_0.8-8           zoo_1.7-7           lumi_2.10.0        
[13] nleqslv_1.9.4       affy_1.36.0         Biobase_2.18.0      BiocGenerics_0.4.0 
[17] MBCB_1.12.0         tcltk2_1.2-3        BiocInstaller_1.8.3

loaded via a namespace (and not attached):
 [1] AnnotationDbi_1.20.0  DBI_0.2-5             IRanges_1.16.2       
 [4] KernSmooth_2.23-8     Matrix_1.0-9          RSQLite_0.11.2       
 [7] XML_3.95-0.1          affyio_1.26.0         annotate_1.36.0      
[10] colorspace_1.1-1      grid_2.15.1           lattice_0.20-10      
[13] methylumi_2.4.0       mgcv_1.7-21           nlme_3.1-104         
[16] parallel_2.15.1       preprocessCore_1.20.0 sfsmisc_1.0-23       
[19] stats4_2.15.1         tools_2.15.1          xtable_1.7-0         
[22] zlibbioc_1.4.0 

Any help, is really appreciated,  please ...

Thank you very much.

With kind regards,
R Fajriyah
(as far as I am concerned, I am not a member of this group yet)

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