Hi, 
I use KeggProfile in my pipeline analysis and it's efficient, but I have problem with one pathway_ID.

Exemple ( copy and paste):

require(KEGGprofile)
download_KEGGfile(pathway_id="04110",specis='hsa')

#In this case , not problem

download_KEGGfile(pathway_id="00910",specis='hsa')

#this pahway exits in KEGG, but the download is impossible 
#[1] "Downloading files: 1/1"
#essai de l'URL 'http://www.genome.jp/kegg-bin/download?entry=hsa00910&format=kgml'
#Content type 'text/plain' length unknown
#URL ouverte
#downloaded 1 bytes

#essai de l'URL 'http://www.genome.jp/kegg/pathway/hsa/hsa00910.png'
#Erreur dans download.file(paste("http://www.genome.jp/kegg/pathway/", specis,  : 
#  impossible d'ouvrir l'URL 'http://www.genome.jp/kegg/pathway/hsa/hsa00910.png'
#De plus : Message d'avis :
#In download.file(paste("http://www.genome.jp/kegg/pathway/", specis,  :
#  ouverture impossible : le statut HTTP était '404 Not Found'


My solution :  omit this pathway in my analysis: ponctual, fast  but not very elegant and not professional !!

If someone has a suggestion , comments or solution, let's go ,

Thanks

Greg 
Montréal




> sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: x86_64-pc-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=French_Canada.1252  LC_CTYPE=French_Canada.1252   
[3] LC_MONETARY=French_Canada.1252 LC_NUMERIC=C                  
[5] LC_TIME=French_Canada.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] KEGGprofile_1.0.0    KEGG.db_2.8.0        RSQLite_0.11.2      
 [4] DBI_0.2-5            AnnotationDbi_1.20.0 Biobase_2.18.0      
 [7] BiocGenerics_0.4.0   TeachingDemos_2.8    png_0.1-4           
[10] XML_3.95-0.1        

loaded via a namespace (and not attached):
[1] IRanges_1.16.2  parallel_2.15.0 stats4_2.15.0
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