

Thank you Kasper. Looking forward to it then.
Khadeeja




________________________________
 From: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>

Cc: "bioconductor@r-project.org" <bioconductor@r-project.org> 
Sent: Tuesday, November 6, 2012 3:40 PM
Subject: Re: [BioC] dmrFdr

The 450k array is not a CHARM style array, so the package won't work
out of the box.  We are finishing up our approach for doing what you
want to do, and plan to release it in minfi shortly.

Kasper


> Hello,
>
> I have run dmrFinder ( in CHARM) on 450k data but when I try to apply dmrFdr to the output from dmrFinder, it does not seem to identify the array annotation package. I have tried package="IlluminaHumanMethylation450k.db" and also package="IlluminaHumanMethylation450kmanifest" and neither seems to work. Would be great if someone could point out the right annotation package for 450k data in dmrFinder.
>
> Thanks,
> Khadeeja
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